Browse Element(s) Details


Os.30516.1.S1_at

Description gb:AK108736.1
DB_XREF= gi:32993945
TID=Os.30516.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506A10.22 (P0506A10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D09, full insert sequence.
FL= gb:AK108736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6736011/11methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30516.1.S1_at--237--8111Chr01:39429702..39429726 (25 bp)
GGACGCGCCTGATGTGGTTCACAAG
LOC_Os01g67360
Os.30516.1.S1_at--926--5651Chr01:39429662..39429686 (25 bp)
GACAGGCTACACTGGCACAGCGAAA
LOC_Os01g67360
Os.30516.1.S1_at--515--5972Chr01:39429605..39429629 (25 bp)
GAGAAGCTTCTCATCGTGGACAATT
LOC_Os01g67360
Os.30516.1.S1_at--1145--4332Chr01:39429569..39429593 (25 bp)
CCAGATCACCCTGCATGATGTTGAT
LOC_Os01g67360
Os.30516.1.S1_at--238--10132Chr01:39429431..39429455 (25 bp)
TATCCAGATGACCACATAGCCGAAT
LOC_Os01g67360
Os.30516.1.S1_at--36--6831Chr01:39429387..39429411 (25 bp)
GTTTACTCCACTAGACACTGTCAGA
LOC_Os01g67360
Os.30516.1.S1_at--1139--9751Chr01:39429337..39429361 (25 bp)
TAATCTCCTGAGCTCTGTGTTGTTC
LOC_Os01g67360
Os.30516.1.S1_at--654--8811Chr01:39429320..39429344 (25 bp)
TGTTGTTCCCAGCATGGTGTTGGAT
LOC_Os01g67360
Os.30516.1.S1_at--1095--651Chr01:39429287..39429311 (25 bp)
ATGCAACCATGCTCGATTCTGTAGA
LOC_Os01g67360
Os.30516.1.S1_at--27--3171Chr01:39429191..39429215 (25 bp)
AATTCCTTCAGAGTTTGCCTTGCTT
LOC_Os01g67360
Os.30516.1.S1_at--992--6291Chr01:39429135..39429159 (25 bp)
GATGATGGAATCTGTAGCCTCTACA
LOC_Os01g67360
Target Sequence 
GGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGCAGACAGGCTACACTGGCACAGCGAAATCGTTGACANTGAGA
ATGGGGGCCTGGATCCTGAGAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATAA
TTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTTGTATACATGCACAGATGAAGA
GTATAAGAGGACTCTACACGCAATAGTTACATATCCAGATGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTA
CTCCACTAGACACTGTCAGATTCCAATAAACCAGTATAGGTAACTTAATCTCCTGAGCTCTGTGTTGTTCCCAGCATGGT
GTTGGATGTGCAGAGATGCAACCATGCTCGATTCTGTAGAGATGTAGTATCTAATTGCTCTGCATTTGTATATTGTATAC
TAGCTGTGTATTATCGGTGAGATTTCTGTGAAATTCCTTCAGAGTTTGCCTTGCTTTGCTTGCTAAGCAATGGCATGATT
CATGTATGATGATGGAATCTGTAGCCTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis