Browse Element(s) Details


Os.51993.1.S1_at

Description gb:AK064490.1
DB_XREF= gi:32974508
TID=Os.51993.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C01, full insert sequence.
FL= gb:AK064490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g673708/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51993.1.S1_at--363--5451Chr01:39459183..39459207 (25 bp)
GAACGACAGCAAGGTTTGCCAAATA
LOC_Os01g67370
Os.51993.1.S1_at--66--9851NONE
TAAATCATCGCCTGCTTTCAGTTGG
NONE
Os.51993.1.S1_at--1082--4451NONE
GCCTGCTTTCAGTTGGTTTTATGAC
NONE
Os.51993.1.S1_at--816--8951Chr01:39459130..39459154 (25 bp)
TGACAAGTTTTCTATCAGCAACAAT
LOC_Os01g67370
Os.51993.1.S1_at--237--10211Chr01:39459086..39459110 (25 bp)
TATTTCCTTTGTGATATGTCGCAGA
LOC_Os01g67370
Os.51993.1.S1_at--780--7211Chr01:39458922..39459093 (25 bp)
GTCGCAGATCGATACAGAATTAACT
LOC_Os01g67370
Os.51993.1.S1_at--1083--2611Chr01:39458963..39458987 (25 bp)
AACCGTCAAAAGTTATTGCAAGCAT
LOC_Os01g67370
Os.51993.1.S1_at--402--7391Chr01:39458850..39458874 (25 bp)
GTGAGTGATTAGTTAATTCCAACCT
LOC_Os01g67370
Os.51993.1.S1_at--179--91Chr01:39458835..39458859 (25 bp)
ATTCCAACCTACATCATATTCTTAG
LOC_Os01g67370
Os.51993.1.S1_at--491--3291Chr01:39458790..39458814 (25 bp)
CAAAGTCTTTATCTTCTGGTAACAA
LOC_Os01g67370
Os.51993.1.S1_at--629--5871NONE
GAGCCTGGATCTCAACTTGATACTT
NONE
Target Sequence 
GAACGACAGCAAGGTTTGCCAAATAAATCATCGCCTGCTTTCAGTTGGTTTTATGACAAGTTTTCTATCAGCAACAATTA
CTGTCATTAGTTGTTGATATTTCCTTTGTGATATGTCGCAGATCGATACAGAATTAACTGACATTCTTATAGAGTGGGGG
ATGCCAGCAACAATGCGTGCAATACATCCAATTTATTTTGCGAAGTGTTTGACAAAGGTAAACCGTCAAAAGTTATTGCA
AGCATCAGCAACCATTGAAATAGTGGAGCAGATGAAAACTTTAACTAGGATAACTTTCATAAATGTATTGGCAATGTGAA
CAATGAATATACTGTGAGTGATTAGTTAATTCCAACCTACATCATATTCTTAGAAATAATGTTGTGAAGGGTGCAAAGTC
TTTATCTTCTGGTAACAAAAGTAAGAGCCTGGATCTCAACTTGATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis