Browse Element(s) Details


OsAffx.23955.1.S1_at

Description tigr:9629.m06695
TID=OsAffx.23955.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6738011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23955.1.S1_at--794--9651Chr01:39463607..39463631 (25 bp)
TCACGAACCAATCACTAGTCATCAC
LOC_Os01g67380
OsAffx.23955.1.S1_at--189--3431Chr01:39463577..39463601 (25 bp)
CAGAGCTTCAGGATTTCAGTAGGAT
LOC_Os01g67380
OsAffx.23955.1.S1_at--386--3451Chr01:39463561..39463585 (25 bp)
CAGTAGGATCCAGTGCAGTGCAGAC
LOC_Os01g67380
OsAffx.23955.1.S1_at--560--5091Chr01:39463530..39463554 (25 bp)
GCACGTTCTTCAGCGGGCATAACAT
LOC_Os01g67380
OsAffx.23955.1.S1_at--639--2511Chr01:39463510..39463534 (25 bp)
AACATTTTTCAGACGTCGCATCTCT
LOC_Os01g67380
OsAffx.23955.1.S1_at--112--10691Chr01:39463486..39463510 (25 bp)
TTCCACGGATCTCGCGGTATCTAAA
LOC_Os01g67380
OsAffx.23955.1.S1_at--1153--6891Chr01:39463470..39463494 (25 bp)
GTATCTAAACAGCATGATCCTCCCA
LOC_Os01g67380
OsAffx.23955.1.S1_at--7--2091Chr01:39463424..39463448 (25 bp)
ACATCGCCGATTCCTACGATTTTTT
LOC_Os01g67380
OsAffx.23955.1.S1_at--642--1871Chr01:39463409..39463433 (25 bp)
ACGATTTTTTCCCAAATGCAGCCGC
LOC_Os01g67380
OsAffx.23955.1.S1_at--728--2991Chr01:39463395..39463419 (25 bp)
AATGCAGCCGCCGAACTAGTAACTT
LOC_Os01g67380
OsAffx.23955.1.S1_at--292--1451Chr01:39463321..39463345 (25 bp)
AGAAGCAACCGGTGGCCATGGACGC
LOC_Os01g67380
Target Sequence 
TCACGAACCAATCACTAGTCATCACTAAATCAGAGCTTCAGGATTTCAGTAGGATCCAGTGCAGTGCAGACACACCAGCA
CGTTCTTCAGCGGGCATAACATTTTTCAGACGTCGCATCTCTTCCACGGATCTCGCGGTATCTAAACAGCATGATCCTCC
CACAAACGAGAAGGAAAACCTCTACATCGCCGATTCCTACGATTTTTTCCCAAATGCAGCCGCCGAACTAGTAACTTCAA
GCAACGGGCTCCAAGGACATACCGGAGAAGACGAAGACGACAACGAAGAAGCAACCGGTGGCCATGGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis