Browse Element(s) Details


OsAffx.23957.1.S1_x_at

Description tigr:9629.m06698
TID=OsAffx.23957.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6741011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23957.1.S1_x_at--734--5071Chr01:39468893..39468917 (25 bp)
GCAGCCGCTGCGTGGGTGGTGCAAG
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--632--1531Chr01:39468870..39468894 (25 bp)
AGCAGGAGCAGGACCACGCCGTGAT
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--38--4991Chr01:39468785..39468809 (25 bp)
GCATGACTTCTTCTCGCAGGCGATG
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--326--10591Chr01:39468775..39468799 (25 bp)
TTCTCGCAGGCGATGCAGCAGCAGC
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--1045--5051Chr01:39468741..39468765 (25 bp)
GCAGCATCGACAACGCGTCGCTCGA
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--764--5611Chr01:39468733..39468757 (25 bp)
GACAACGCGTCGCTCGAGCACAGCA
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--103--9291Chr01:39468697..39468721 (25 bp)
TCCGTCGTCTACAACGGCGACAATG
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--833--1791Chr01:39468616..39468640 (25 bp)
ACCGCGGTGGCGAGCAGCCACGATC
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--899--991Chr01:39468505..39468529 (25 bp)
AGGATGCCATCCTGGGCGATGACGC
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--931--5051Chr01:39468456..39468480 (25 bp)
GCAGCAGCGACATGACCGGAGTCTG
LOC_Os01g67410
OsAffx.23957.1.S1_x_at--260--2111Chr01:39468447..39468471 (25 bp)
ACATGACCGGAGTCTGCCATGGCGC
LOC_Os01g67410
Target Sequence 
GCAGCCGCTGCGTGGGTGGTGCAAGCAGGAGCAGGACCACGCCGTGATCGCGGCGGCGCACAGCCTGCAGGATCTCCACC
ACCTCAACCTCGGCGCCGCCGCCGCCGCGCATGACTTCTTCTCGCAGGCGATGCAGCAGCAGCACGGCCTCGGCAGCATC
GACAACGCGTCGCTCGAGCACAGCACCGGCTCCAACTCCGTCGTCTACAACGGCGACAATGGCGGCGGAGGCGGCGGCTA
CATCATGGCGCCGATGAGCGCCGTGTCGGCCACGGCCACCGCGGTGGCGAGCAGCCACGATCACGGCGGCGACGGCGGGA
AGCAGGTGCAGATGGGGTACGACAGCTACCTCGTCGGCGCAGACGCCTACGGCGGCGGCGGCGCCGGGAGGATGCCATCC
TGGGCGATGACGCCGGCGTCGGCGCCGGCCGCCACGAGCAGCAGCGACATGACCGGAGTCTGCCATGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23957.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis