Browse Element(s) Details


Os.28994.1.S1_at

Description gb:AK110796.1
DB_XREF= gi:32996005
TID=Os.28994.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydroxyproline-rich glycoprotein (P0035F12.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D09, full insert sequence.
FL= gb:AK110796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6739011/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28994.1.S1_at--372--10211Chr01:39464432..39464456 (25 bp)
TATTTACCTCCTAAAGTTCCTCTTG
LOC_Os01g67390
Os.28994.1.S1_at--571--2331Chr01:39464420..39464444 (25 bp)
AAAGTTCCTCTTGAGATGTCTCCAC
LOC_Os01g67390
Os.28994.1.S1_at--124--4991Chr01:39464337..39464361 (25 bp)
GCATGCTGGCATATCATCGACAACA
LOC_Os01g67390
Os.28994.1.S1_at--183--2171Chr01:39464315..39464339 (25 bp)
ACACCATCTGTGAACTCCTATCAAT
LOC_Os01g67390
Os.28994.1.S1_at--677--2711Chr01:39464263..39464287 (25 bp)
AAGCATCAGCGATGAGGCTCCTGAA
LOC_Os01g67390
Os.28994.1.S1_at--728--1391Chr01:39464035..39464059 (25 bp)
AGACTTGAAGTCTACCTCGAGAAGA
LOC_Os01g67390
Os.28994.1.S1_at--603--7891Chr01:39464003..39464027 (25 bp)
GGTTAATTCGAGTTCCAGGCATCCA
LOC_Os01g67390
Os.28994.1.S1_at--312--3491Chr01:39463988..39464012 (25 bp)
CAGGCATCCATCTCAGTATCTAGGA
LOC_Os01g67390
Os.28994.1.S1_at--661--10331Chr01:39463939..39463963 (25 bp)
TTTCAGCTTATATCTCATTGCCTAG
LOC_Os01g67390
Os.28994.1.S1_at--299--7271Chr01:39463888..39463912 (25 bp)
GTCCAGTAAGCATTGCCAGTGTCTC
LOC_Os01g67390
Os.28994.1.S1_at--264--6911Chr01:39463842..39463866 (25 bp)
GTATGTTGTTGGTTCCTAGCAGCCC
LOC_Os01g67390
Target Sequence 
TATTTACCTCCTAAAGTTCCTCTTGAGATGTCTCCACCGGCACATGCAACATCTCCACAGCCTCTGGTCCACTATAGCCC
TCCGCCACCACTGCAGCATGCTGGCATATCATCGACAACACCATCTGTGAACTCCTATCAATCCCCGCCACCAGTAAATC
AGCTGTCATAAGCATCAGCGATGAGGCTCCTGAAGTGATCAGGCGTCTGCAGAATAAACGGGAGACTTGAAGTCTACCTC
GAGAAGAAGCAGTGGGTTAATTCGAGTTCCAGGCATCCATCTCAGTATCTAGGATTGTTACGACAGTAACTAGTATTGTT
TCAGCTTATATCTCATTGCCTAGAGCTAATTTCAGCAGGGTAATCATAAGTCCAGTAAGCATTGCCAGTGTCTCTAGTTT
TCAACTGAATTCAATGTATGTTGTTGGTTCCTAGCAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis