Browse Element(s) Details


OsAffx.23956.1.S1_at

Description tigr:9629.m06697
TID=OsAffx.23956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6740010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23956.1.S1_at--1012--9671Chr01:39467557..39467581 (25 bp)
TCACCTCTTGCACTGAGGTTTGTTA
LOC_Os01g67400
OsAffx.23956.1.S1_at--764--3331Chr01:39467547..39467571 (25 bp)
CACTGAGGTTTGTTAGCTGCTATGT
LOC_Os01g67400
OsAffx.23956.1.S1_at--6--6791Chr01:39467536..39467560 (25 bp)
GTTAGCTGCTATGTTGTGGTTAGTA
LOC_Os01g67400
OsAffx.23956.1.S1_at--392--8651Chr01:39467522..39467546 (25 bp)
TGTGGTTAGTAAGAAGTTTGAGCAG
LOC_Os01g67400
OsAffx.23956.1.S1_at--1063--6851Chr01:39467507..39467531 (25 bp)
GTTTGAGCAGTTGAAACCTTGTATG
LOC_Os01g67400
OsAffx.23956.1.S1_at--82--351Chr01:39467364..39467431 (25 bp)
ATAAAAGTGACTTTCCCAGCTGGAT
LOC_Os01g67400
OsAffx.23956.1.S1_at--71--2871NONE
AAGTGACTTTCCCAGCTGGATTGTA
NONE
OsAffx.23956.1.S1_at--694--5691Chr01:39467356..39467380 (25 bp)
GACTTTCCCAGCTGGATTGTATGAT
LOC_Os01g67400
OsAffx.23956.1.S1_at--19--6611Chr01:39467342..39467366 (25 bp)
GATTGTATGATTCTGCAGCTATGCA
LOC_Os01g67400
OsAffx.23956.1.S1_at--969--6551Chr01:39467334..39467358 (25 bp)
GATTCTGCAGCTATGCATAAGTACA
LOC_Os01g67400
OsAffx.23956.1.S1_at--419--5051Chr01:39467328..39467352 (25 bp)
GCAGCTATGCATAAGTACAATGAAA
LOC_Os01g67400
Target Sequence 
TCACCTCTTGCACTGAGGTTTGTTAGCTGCTATGTTGTGGTTAGTAAGAAGTTTGAGCAGTTGAAACCTTGTATGATAAT
TGACAAGATAAAAGTGACTTTCCCAGCTGGATTGTATGATTCTGCAGCTATGCATAAGTACAATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis