Browse Element(s) Details


Os.30572.1.S1_at

Description gb:AK108651.1
DB_XREF= gi:32993860
TID=Os.30572.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase (P0047E11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C09, full insert sequence.
FL= gb:AK108651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5061011/11SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os01g504801/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50530Os.52529.1.S1_x_at9/111+29351198..29352673Cytochrome P450 family protein
LOC_Os01g50539NANA1+29353527..29354800NA
LOC_Os01g50550OsAffx.1353.1.S1_x_at1/111+29358340..29360260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50560NANA1+29362120..29362350hypothetical protein
LOC_Os01g50570NANA1+29363218..29364118thromboxane-A synthase, putative
LOC_Os01g50580NANA1+29366846..29368211Cytochrome P450 family protein, expressed
LOC_Os01g50590NANA1+29371896..29374841Cytochrome P450 family protein
LOC_Os01g50600OsAffx.11548.1.S1_at11/111+29376328..29376881hypothetical protein
LOC_Os01g50610Os.30572.1.S1_at11/111+29377624..29380292SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os01g50616Os.26967.1.S2_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50616Os.26967.1.S1_a_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50622Os.15428.1.S1_at10/111+29399634..29403172wound-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30572.1.S1_at--482--4511Chr01:29378269..29378293 (25 bp)
GCCGACGGCTATATCGACAGGCGTA
LOC_Os01g50610
Os.30572.1.S1_at--31--10531Chr01:29378010..29378034 (25 bp)
TTCAGGATGGACTACGTGCAGACGT
LOC_Os01g50610
Os.30572.1.S1_at--1074--7331Chr01:29377995..29378019 (25 bp)
GTGCAGACGTACGAGATCAACCTGA
LOC_Os01g50610
Os.30572.1.S1_at--989--6432Chr01:29377924..29377948 (25 bp)
GATCAGGGCCATCCAGGAGTCCATG
LOC_Os01g50610
Os.30572.1.S1_at--344--4811Chr01:29377843..29377867 (25 bp)
GCTCGTCACCGCGTCCATGGAGAGG
LOC_Os01g50610
Os.30572.1.S1_at--974--7691Chr01:29377793..29377817 (25 bp)
GGGTCGTCCTCACCAGGTTGTGACA
LOC_Os01g50610
Os.30572.1.S1_at--260--3311Chr01:29377763..29377787 (25 bp)
CACAAAGCTGTGACGACTGACCAGA
LOC_Os01g50610
Os.30572.1.S1_at--779--3711Chr01:29377750..29377774 (25 bp)
CGACTGACCAGAGCGATTTGTACCA
LOC_Os01g50610
Os.30572.1.S1_at--274--6972Chr01:29377731..29377755 (25 bp)
GTACCAGTTTATAGTTTGACCCCAT
LOC_Os01g50610
Os.30572.1.S1_at--1158--6831Chr01:29377718..29377742 (25 bp)
GTTTGACCCCATGTTTCTGAATTCT
LOC_Os01g50610
Os.30572.1.S1_at--336--5852Chr01:29377686..29377710 (25 bp)
GACCATGTGGTGTTTAGTTGTTGTA
LOC_Os01g50610
Target Sequence 
GCCGACGGCTATATCGACAGGCGTACCACCTTCCTCTGGGAGCTCCTCTCGGAGTCGTTCGCCTCCCTGGTCGCACAGGG
GCTGGTCGAGGAGGACAAGGTGGACGCGTACAACGTGCCGTTCTACGCGCCGTCGATAGGGGAGATCGAGGAGGAGGTGA
GGCGGGAGGGATCGTTCAGGATGGACTACGTGCAGACGTACGAGATCAACCTGAGCAGCAGCGGCGACGCGAGGAGGGAC
GGCAGGACGGTGTCGATGGCGATCAGGGCCATCCAGGAGTCCATGCTCAGCCACCACTTCGGCCCGGAGATCGTCGACGC
GCTCTTCGCCAAGTACACCGAGCTCGTCACCGCGTCCATGGAGAGGGAGGAGGTGAAGAGCGTCCAGATTGGGGTCGTCC
TCACCAGGTTGTGACACAAACCACAAAGCTGTGACGACTGACCAGAGCGATTTGTACCAGTTTATAGTTTGACCCCATGT
TTCTGAATTCTAATGTGTGACCATGTGGTGTTTAGTTGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis