Browse Element(s) Details


Os.30681.1.S1_at

Description gb:AK108490.1
DB_XREF= gi:32993699
TID=Os.30681.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G01, full insert sequence.
FL= gb:AK108490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0313011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed
LOC_Os07g03120OsAffx.16059.1.S1_at11/117+1192708..1193390expressed protein
LOC_Os07g03130Os.30681.1.S1_at11/117+1197488..1199557expressed protein
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed
LOC_Os07g03150OsAffx.16060.1.S1_at11/117+1212157..1216052f13j11 PRLI-interacting factor G, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30681.1.S1_at--118--6911Chr07:1197920..1197944 (25 bp)
GTATCTATCATGAAGGCTGCTGGTT
LOC_Os07g03130
Os.30681.1.S1_at--456--2811Chr07:1197820..1197844 (25 bp)
AAGATCAGGCTACTGTCCAATGCCC
LOC_Os07g03130
Os.30681.1.S1_at--7--3031Chr07:1197802..1197826 (25 bp)
AATGCCCTCCTGGTAAAGTAATGGT
LOC_Os07g03130
Os.30681.1.S1_at--766--851Chr07:1197769..1197793 (25 bp)
ATGGCAGGGCTCACTGTGTTGTGAA
LOC_Os07g03130
Os.30681.1.S1_at--292--6531Chr07:1197654..1197678 (25 bp)
GATTTAGCTAGTCTTTGAGGCCCTT
LOC_Os07g03130
Os.30681.1.S1_at--53--6231Chr07:1197638..1197662 (25 bp)
GAGGCCCTTTATATGATCTTCTGTA
LOC_Os07g03130
Os.30681.1.S1_at--440--8691Chr07:1197610..1197634 (25 bp)
TGTGCCGAGCACACTTGTCTAAAGA
LOC_Os07g03130
Os.30681.1.S1_at--1063--711Chr07:1197559..1197583 (25 bp)
ATGATCGTCCATGTCTTGCTAATTG
LOC_Os07g03130
Os.30681.1.S1_at--553--10711Chr07:1197544..1197568 (25 bp)
TTGCTAATTGCCCTCGTTGGTGAAC
LOC_Os07g03130
Os.30681.1.S1_at--884--8611Chr07:1197527..1197551 (25 bp)
TGGTGAACTCCATCAGTATGCTGCT
LOC_Os07g03130
Os.30681.1.S1_at--640--10131Chr07:1197511..1197535 (25 bp)
TATGCTGCTCAGTTGATACCAGTAT
LOC_Os07g03130
Target Sequence 
GTATCTATCATGAAGGCTGCTGGTTACGAGCCAGTGATAGGAAGACACAGCATAAAATTGGATATGGCAGGTTTGTTCAG
TAAGGAGGCAACCAGTGGAAAAGATCAGGCTACTGTCCAATGCCCTCCTGGTAAAGTAATGGTTCTCGAAGATGGCAGGG
CTCACTGTGTTGTGAAGGAAAGAGTCGAGATACCTTTCGACACCAACCTCGCCTCTCCAAATGCAANTTATGGGTTAGGC
TGAAATTGGGCTTTTGTCAATATTAGGATTTAGCTAGTCTTTGAGGCCCTTTATATGATCTTCTGTAGAATGTGCCGAGC
ACACTTGTCTAAAGATTGAAGCCTATGTATTATATCTATCTATGATCGTCCATGTCTTGCTAATTGCCCTCGTTGGTGAA
CTCCATCAGTATGCTGCTCAGTTGATACCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis