Browse Element(s) Details


Os.30746.1.S1_at

Description gb:AK108382.1
DB_XREF= gi:32993591
TID=Os.30746.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0031C24.26 (OSJNBa0031C24.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E08, full insert sequence.
FL= gb:AK108382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1187011/11Cytochrome P450 family protein, expressed
LOC_Os07g119706/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11840NANA7+6548970..6550895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11850Os.45976.1.S1_at5/117+6552605..6555180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11850Os.45173.1.S1_x_at1/117+6552605..6555180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11850Os.45976.1.S1_x_at1/117+6552605..6555180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11860OsAffx.22385.1.S1_x_at6/117+6559925..6565630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11860OsAffx.20329.1.S1_at2/117+6559925..6565630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11860Os.46862.1.S1_at1/117+6559925..6565630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11870Os.30746.1.S1_at11/117+6572528..6575483Cytochrome P450 family protein, expressed
LOC_Os07g11890OsAffx.16216.1.S1_at11/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11890Os.52782.1.S1_at1/117+6598090..6601771Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30746.1.S1_at--410--12Chr07:6575075..6575099 (25 bp)
GGGAGTAACTTTGAGTTTCTACCAT
LOC_Os07g11870
Os.30746.1.S1_at--150--7832Chr07:6575108..6575132 (25 bp)
GGTCACAGAATATGTCCTGGCATTA
LOC_Os07g11870
Os.30746.1.S1_at--1055--6192Chr07:6575234..6575258 (25 bp)
GAGGCACCTGGACTTATTGCCGCTA
LOC_Os07g11870
Os.30746.1.S1_at--886--72Chr07:6575249..6575273 (25 bp)
ATTGCCGCTAAACACACTAGCCTGA
LOC_Os07g11870
Os.30746.1.S1_at--229--4472Chr07:6575268..6575292 (25 bp)
GCCTGAATGTATGTCCAGTTACTCA
LOC_Os07g11870
Os.30746.1.S1_at--628--10472Chr07:6575286..6575310 (25 bp)
TTACTCACATTGCTCCAAGCTGCTC
LOC_Os07g11870
Os.30746.1.S1_at--688--9092Chr07:6575296..6575320 (25 bp)
TGCTCCAAGCTGCTCATAAATGCCA
LOC_Os07g11870
Os.30746.1.S1_at--1058--2452Chr07:6575325..6575349 (25 bp)
AACAAATAATGCCTCTTCAAAAAGA
LOC_Os07g11870
Os.30746.1.S1_at--662--231Chr07:6575371..6575395 (25 bp)
ATATTAGGTTTACGTGATTCCACAA
LOC_Os07g11870
Os.30746.1.S1_at--773--2512Chr07:6575399..6575423 (25 bp)
AACTTATGTGCCTAAGCGGAAACAT
LOC_Os07g11870
Os.30746.1.S1_at--112--6011Chr07:6575427..6575451 (25 bp)
GAGAGCTTATTTATGTACTCATGCT
LOC_Os07g11870
Target Sequence 
GGGAGTAACTTTGAGTTTCTACCATTTGGCTCTGGTCACAGAATATGTCCTGGCATTAATCTTGGGCTGGCCAACATGGA
GTTTGCATTGGCTAACCTGCTCTACCATTTTGACTGGAAGCTACCCAATGGAATGTTGCACAAGGATCTTGATATGCGGG
AGGCACCTGGACTTATTGCCGCTAAACACACTAGCCTGAATGTATGTCCAGTTACTCACATTGCTCCAAGCTGCTCATAA
ATGCCAATGTAACAAATAATGCCTCTTCAAAAAGAACATAACAAATGTGCTATCAGATATTAGGTTTACGTGATTCCACA
AAAAAACTTATGTGCCTAAGCGGAAACATATAGAGAGCTTATTTATGTACTCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis