Browse Element(s) Details


OsAffx.16216.1.S1_at

Description tigr:9635.m01164
TID=OsAffx.16216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1189011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11870Os.30746.1.S1_at11/117+6572528..6575483Cytochrome P450 family protein, expressed
LOC_Os07g11890OsAffx.16216.1.S1_at11/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11890Os.52782.1.S1_at1/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11900Os.4414.1.S1_x_at7/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11900Os.8502.5.S1_x_at5/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11910Os.4414.1.S1_x_at11/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11910Os.8502.5.S1_x_at5/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.4414.1.S1_x_at11/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.8502.5.S1_x_at5/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16216.1.S1_at--272--4311Chr07:6600623..6600647 (25 bp)
CCTTCTTGATCCCTCGAAAATGCCA
LOC_Os07g11890
OsAffx.16216.1.S1_at--867--5991Chr07:6600829..6600852 (24 bp)
GAGACGCAGGATATGTCCCGGCATA
LOC_Os07g11890
OsAffx.16216.1.S1_at--564--3271Chr07:6600867..6600891 (25 bp)
CAACATAGAGCTTGCCTTGGCTAAC
LOC_Os07g11890
OsAffx.16216.1.S1_at--686--10771Chr07:6600883..6600907 (25 bp)
TTGGCTAACCTTCTTTATCATTTCG
LOC_Os07g11890
OsAffx.16216.1.S1_at--929--6191Chr07:6600955..6600979 (25 bp)
GAGGCACTTGAACTTCTTGCTGCTA
LOC_Os07g11890
OsAffx.16216.1.S1_at--187--3631Chr07:6600970..6600994 (25 bp)
CTTGCTGCTAAACACACTAGTCTGA
LOC_Os07g11890
OsAffx.16216.1.S1_at--1156--771Chr07:6600995..6601019 (25 bp)
ATGTGTGTCCAGTTAGTAAGATTGC
LOC_Os07g11890
OsAffx.16216.1.S1_at--12--5052Chr07:6601639..6601663 (25 bp)
GCAGATGAATCGCAAACTCAGCATA
LOC_Os07g11890
OsAffx.16216.1.S1_at--1106--2532Chr07:6601653..6601677 (25 bp)
AACTCAGCATAGCAACAGCAGCAGA
LOC_Os07g11890
OsAffx.16216.1.S1_at--816--6632Chr07:6601690..6601714 (25 bp)
GTTGTCCATCCCATGCAGTGGAATG
LOC_Os07g11890
OsAffx.16216.1.S1_at--224--612Chr07:6601717..6601741 (25 bp)
ATGCCCACATGAACAACGTTTCCAT
LOC_Os07g11890
Target Sequence 
CCTTCTTGATCCCTCGAAAATGCCATGAGACAAGCAAGATCATGGGTTATGATGTACCTAAGGGTACATCAATATTTGTG
AATATGTGGGCAATTTGCAGGGATAGTAAGTATTGGGAGAATGCCAAAGAATTCATGCCAGAGAGACGCAGGATATGTCC
CGGCATAAATCTTGGGCTGGCCAACATAGAGCTTGCCTTGGCTAACCTTCTTTATCATTTCGATTGGAAGTTGCCAAATG
GAATGTTGCACAAGGATCTTGATATGCGGGAGGCACTTGAACTTCTTGCTGCTAAACACACTAGTCTGAATGTGTGTCCA
GTTAGTAAGATTGCTTCAAGGAGGATCTATCAATTGAACAACATTTCAAAATTGTTAGACAAATTGGTTCATGAGGAATT
GAGGCACCAAGAGCAGATGAATCGCAAACTCAGCATAGCAACAGCAGCAGAGGAGGCCAAACAGTTGTCCATCCCATGCA
GTGGAATGAAATGCCCACATGAACAACGTTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis