Browse Element(s) Details


Os.4414.1.S1_x_at

Description gb:D11385.1
DB_XREF= gi:218186
TID=Os.4414.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4414 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for prolamin, complete cds.
PROD=prolamin
FL= gb:D11385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1191011/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g1192011/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g119507/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g119007/11Prolamin PPROL 4A precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11890OsAffx.16216.1.S1_at11/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11890Os.52782.1.S1_at1/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11900Os.4414.1.S1_x_at7/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11900Os.8502.5.S1_x_at5/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11910Os.4414.1.S1_x_at11/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11910Os.8502.5.S1_x_at5/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.4414.1.S1_x_at11/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.8502.5.S1_x_at5/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA
LOC_Os07g11970Os.30746.1.S1_at6/117+6630871..6633707Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4414.1.S1_x_at--1069--94Chr07:6619086..6619110 (25 bp)
ATGTTTTAGGTCAAAATATTAGGCA
LOC_Os07g11950
Os.4414.1.S1_x_at--355--234Chr07:6619071..6619095 (25 bp)
ATATTAGGCAATATCAGGTGCAGTC
LOC_Os07g11950
Os.4414.1.S1_x_at--284--1714Chr07:6618933..6618957 (25 bp)
ACCAAGTCTTGCAACAGCTCAGGCT
LOC_Os07g11950
Os.4414.1.S1_x_at--1115--4374Chr07:6618932..6618956 (25 bp)
CCAAGTCTTGCAACAGCTCAGGCTG
LOC_Os07g11950
Os.4414.1.S1_x_at--289--9674Chr07:6618893..6618917 (25 bp)
TCACTACCAGGACATTAACGTTGTC
LOC_Os07g11950
Os.4414.1.S1_x_at--1022--9974Chr07:6618889..6618913 (25 bp)
TACCAGGACATTAACGTTGTCCAGG
LOC_Os07g11950
Os.4414.1.S1_x_at--721--4334Chr07:6618887..6618911 (25 bp)
CCAGGACATTAACGTTGTCCAGGCC
LOC_Os07g11950
Os.4414.1.S1_x_at--951--8354Chr07:6618712..6618736 (25 bp)
GGCGGTGTCTTGTACTGAATTTTCA
NONE
Os.4414.1.S1_x_at--200--10314Chr07:6618692..6618716 (25 bp)
TTTCACAATATTGTAGTTCGGAAGT
NONE
Os.4414.1.S1_x_at--647--6714Chr07:6618677..6618701 (25 bp)
GTTCGGAAGTGAAAATATAAGCTCA
NONE
Os.4414.1.S1_x_at--786--10174Chr07:6618662..6618686 (25 bp)
TATAAGCTCAGGTATCATCGTATGT
NONE
Target Sequence 
ATGTTTTAGGTCAAAATATTAGGCAATATCAGGTGCAGTCGCCTCTCCTGCTACAGCAACAGGTGCTTAGCCNATATAAT
GAGTTCGTAAGGCAGCAGTATAGCATTGCGGCAAGCNCCTTCTTGCAATCAGCTGNGTTTCAACTGAGAAACAACCAAGT
CTTGCAACAGCTCAGGCTGGTGGCGCAACAATCTCACTACCAGGACATTAACGTTGTCCAGGCCATAGCGCANCAGCTAC
ACCTCCAGCAGTTTGGCNATCTCTACATTGACCGGAATCTGGCTCAAGCNCAAGCACTGTTGGCTTTTAACTTGCCATCT
ACATATGGTATCTACCCTNGGTNCTATAGTGCACCNGNTAGNATTACCACCCTTGGCGGTGTCTTGTACTGAATTTTCAC
AATATTGTAGTTCGGAAGTGAAAATATAAGCTCAGGTATCATCGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4414.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis