Browse Element(s) Details


Os.30747.1.S1_at

Description gb:AK108380.1
DB_XREF= gi:32993589
TID=Os.30747.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-directed RNA polymerase (B1074C08.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E05, full insert sequence.
FL= gb:AK108380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3435011/11RNA dependent RNA polymerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified
LOC_Os01g34320OsAffx.2152.1.S1_at11/111+19247667..19248375hypothetical protein
LOC_Os01g34330Os.11689.1.S1_at11/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34330Os.11689.2.S1_at10/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34350Os.30747.1.S1_at11/111+19267236..19272378RNA dependent RNA polymerase family protein, expressed
LOC_Os01g34360Os.47463.1.S1_x_at3/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34360Os.14491.2.S1_x_at2/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0016458biological_processgene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30747.1.S1_at--1053--8131Chr01:19267804..19267828 (25 bp)
GGACAGGCTGAAGACTGCTTACTCT
LOC_Os01g34350
Os.30747.1.S1_at--273--9071Chr01:19267789..19267813 (25 bp)
TGCTTACTCTGCACTACGCAAGGAG
LOC_Os01g34350
Os.30747.1.S1_at--583--8751Chr01:19267697..19267721 (25 bp)
TGTACGAGATGAAGGCCTCTGCCTG
LOC_Os01g34350
Os.30747.1.S1_at--633--311Chr01:19267602..19267626 (25 bp)
ATACCGGCAAGCCTTAGCTTTGCAT
LOC_Os01g34350
Os.30747.1.S1_at--738--10011Chr01:19267588..19267612 (25 bp)
TAGCTTTGCATGGATCCCGGTGGAT
LOC_Os01g34350
Os.30747.1.S1_at--65--3971Chr01:19267571..19267595 (25 bp)
CGGTGGATTACTTGGCGCGGATAAA
LOC_Os01g34350
Os.30747.1.S1_at--340--4931Chr01:19267495..19267519 (25 bp)
GCTTGCAGCATACATCTCCGAGAGG
LOC_Os01g34350
Os.30747.1.S1_at--112--9791Chr01:19267442..19267466 (25 bp)
TAAGACCACTCTGCCATTCGTAATG
LOC_Os01g34350
Os.30747.1.S1_at--538--10511Chr01:19267356..19267380 (25 bp)
TTCACTGAACTTGATCTCCCGAATG
LOC_Os01g34350
Os.30747.1.S1_at--691--10471Chr01:19267308..19267332 (25 bp)
TTACATGCCCCTCAAGCCTGAAAAA
LOC_Os01g34350
Os.30747.1.S1_at--837--6991Chr01:19267281..19267305 (25 bp)
GTACGTTTCAGTTGAGGGCTGTCTA
LOC_Os01g34350
Target Sequence 
GGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTNGAGAGCATAGCATCGGATCAATGCG
AGATTGNTGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGG
GTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGA
TTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCAT
ACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGCCGGTTCAAAGGG
CATGCGTACAAAATATCTGAGTTTTTTTTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGNTTCAGT
GTGCTTTTGTTCCTNCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis