Browse Element(s) Details


Os.30832.2.S1_at

Description gb:NM_185976.1
DB_XREF= gi:34899037
GEN=P0047B07.21
TID=Os.30832.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2,At2g28420 (P0047B07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2,At2g28420 (P0047B07.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g193101/11retrotransposon protein, putative, LINE subclass
LOC_Os08g265001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30832.2.S1_at--704--10511Chr07:27650090..27650114 (25 bp)
TTCACGTCGCTACGTCGATCAGTCA
NONE
Os.30832.2.S1_at--182--6451Chr07:27650074..27650098 (25 bp)
GATCAGTCAGCGACGGCACACGGGC
NONE
Os.30832.2.S1_at--546--10591Chr07:27649120..27649144 (25 bp)
TTCTCGACTGTGTGTTCGCTCAACA
NONE
Os.30832.2.S1_at--303--9711Chr07:27649101..27649125 (25 bp)
TCAACAGGCCTGACTCCGTGTGCTG
NONE
Os.30832.2.S1_at--85--7695Chr08:16003573..16003830 (25 bp)
GGGTTTTTGACTCTGCACTCTTTTC
LOC_Os08g26500
Os.30832.2.S1_at--249--9491Chr07:27648912..27648932 (21 bp)
TCTGCACTCTTTTCGGTCTCAAAAA
NONE
Os.30832.2.S1_at--92--6351Chr07:27647727..27647751 (25 bp)
GATGCTGCTAACCACCAAAAGGTTC
NONE
Os.30832.2.S1_at--634--7891Chr07:27647707..27647731 (25 bp)
GGTTCAGACTGAGGGTATTTCCATT
NONE
Os.30832.2.S1_at--8--191Chr07:27647691..27647715 (25 bp)
ATTTCCATTTTGTCAGTGGTTCGAA
NONE
Os.30832.2.S1_at--649--1091Chr07:27647677..27647701 (25 bp)
AGTGGTTCGAACAGACAATCAGAGA
NONE
Os.30832.2.S1_at--552--6891Chr07:27647636..27647660 (25 bp)
GTATGAAAGTTGTACCTCGTGGGTA
NONE
Target Sequence 
TTCACGTCGCTACGTCGATCAGTCAGCGACGGCACACGGGCGCCTCGGCGCGACTCCGAAGAAGCGGGCGGCGATCATCA
CGGGGATGGCGCGCGCGCCTCGCGGAGAAAGCGTGGCATCGATACCCACTCGGTCTGTCCCTTTTGTGCTCAGGAGCTTG
AGAAGACGAACCACATCCTTCTCGACTGTGTGTTCGCTCAACAGGCCTGACTCCGTGTGCTGTCGCCTTTTGGTTGGACT
GCCCTCTCTCCATCCCGTGGCAGCTGGCTCCAGGACTGATGGCCATCTTCTAGGGCATGCTTACCTGAGCATCTCCGTGC
TGGCTTCGACTCCCTGGTCCTCCTGGTCCCTTGGCAGCTGTGGACGGAACGGAACTCCGGGGTTTTTGACTCTGCACTCT
TTTCGGTCTCAAAAAGATGCTGATGCTGCTAACCACCAAAAGGTTCAGACTGAGGGTATTTCCATTTTGTCAGTGGTTCG
AACAGACAATCAGAGAAAGCAATACAAGTACAGTATGAAAGTTGTACCTCGTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30832.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis