Browse Element(s) Details


Os.31303.1.S1_at

Description gb:AK107555.1
DB_XREF= gi:32992764
TID=Os.31303.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1217B09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B03, full insert sequence.
FL= gb:AK107555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0893011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g08940OsAffx.22270.1.S1_x_at11/113+4614255..4614680hypothetical protein
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31303.1.S1_at--393--991Chr03:4609314..4609338 (25 bp)
AGGATGATTCCAAGCTGGGCTCTGT
LOC_Os03g08930
Os.31303.1.S1_at--749--8191Chr03:4609339..4609363 (25 bp)
GGAAGACATTGCCACCGCTGTGCAT
LOC_Os03g08930
Os.31303.1.S1_at--28--8691Chr03:4609357..4609381 (25 bp)
TGTGCATCAGATCCTGGGCAGCATT
LOC_Os03g08930
Os.31303.1.S1_at--528--1611Chr03:4609409..4609433 (25 bp)
AGCTGACGCCGCGATCGATGGAGAC
LOC_Os03g08930
Os.31303.1.S1_at--521--5991Chr03:4609441..4609465 (25 bp)
GAGACGGCCGCCATGTGAAGCCTCT
LOC_Os03g08930
Os.31303.1.S1_at--76--9191Chr03:4609465..4609489 (25 bp)
TGCCTCGTCCGTCCTGGAAATGGAA
LOC_Os03g08930
Os.31303.1.S1_at--1089--5551Chr03:4609481..4609505 (25 bp)
GAAATGGAACCATGGCGCCTCGATC
LOC_Os03g08930
Os.31303.1.S1_at--426--4171Chr03:4609496..4609520 (25 bp)
CGCCTCGATCGATAGCTTGTTAGCT
LOC_Os03g08930
Os.31303.1.S1_at--235--5291Chr03:4609531..4609555 (25 bp)
GAATGTGATTGTACCCTAGCCAACA
LOC_Os03g08930
Os.31303.1.S1_at--1001--4371Chr03:4609549..4609573 (25 bp)
GCCAACAGAGTGCTGCATGCATGCA
LOC_Os03g08930
Os.31303.1.S1_at--973--10151Chr03:4609575..4609599 (25 bp)
TATCTCCGGCGACCTTAATGAGAAA
LOC_Os03g08930
Target Sequence 
AGGATGATTCCAAGCTGGGCTCTGTGGAAGACATTGCCACCGCTGTGCATCAGATCCTGGGCAGCATTCAGCAGCAGGAG
GCCGTCCTCTCCATCAGCTGACGCCGCGATCGATGGAGACGACAACCGAGACGGCCGCCATGTGAAGCCTCTGCCTCGTC
CGTCCTGGAAATGGAACCATGGCGCCTCGATCGATAGCTTGTTAGCTTGTAATGTGTGAATGTGATTGTACCCTAGCCAA
CAGAGTGCTGCATGCATGCANTATCTCCGGCGACCTTAATGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis