Browse Element(s) Details


Os.31326.1.S1_at

Description gb:AK107516.1
DB_XREF= gi:32992725
TID=Os.31326.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0697C12.14 (P0697C12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F04, full insert sequence.
FL= gb:AK107516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38450OsAffx.11375.1.S1_at11/111+21936569..21937894hypothetical protein
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein
LOC_Os01g38510Os.13624.1.S1_at11/111+21958028..21959974Sec61beta family protein, expressed
LOC_Os01g38520Os.31326.1.S1_at11/111+21960819..21962301expressed protein
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31326.1.S1_at--627--5811Chr01:21961857..21961881 (25 bp)
GACGCCTACCTCTGCTTGGAGATCG
LOC_Os01g38520
Os.31326.1.S1_at--259--1671Chr01:21961947..21961971 (25 bp)
AGCCTACCATTTGTCGTGTTCGTCA
LOC_Os01g38520
Os.31326.1.S1_at--862--5251Chr01:21961997..21962021 (25 bp)
GAATCTGATCGATCTTGCATGCTTA
LOC_Os01g38520
Os.31326.1.S1_at--424--1271Chr01:21962102..21962126 (25 bp)
AGATACGGTATATGCCTCAGTCAGT
LOC_Os01g38520
Os.31326.1.S1_at--109--10151Chr01:21962112..21962136 (25 bp)
TATGCCTCAGTCAGTATGTCGTAAT
LOC_Os01g38520
Os.31326.1.S1_at--741--451Chr01:21962143..21962167 (25 bp)
ATCTCTAGTAGTGTCGTGGTATTAT
LOC_Os01g38520
Os.31326.1.S1_at--27--5931Chr01:21962187..21962211 (25 bp)
GAGCTTGTTGCATGGTGACGGTATT
LOC_Os01g38520
Os.31326.1.S1_at--199--5651Chr01:21962203..21962227 (25 bp)
GACGGTATTACTTGGATCATCGGAT
LOC_Os01g38520
Os.31326.1.S1_at--131--6411Chr01:21962217..21962241 (25 bp)
GATCATCGGATTGCGGACTTGAGAA
LOC_Os01g38520
Os.31326.1.S1_at--894--6851Chr01:21962256..21962280 (25 bp)
GTTTGGTTTCTGACTGTTTGGGACT
LOC_Os01g38520
Os.31326.1.S1_at--251--6231Chr01:21962275..21962299 (25 bp)
GGGACTATTTGATGATTTTACCTGT
LOC_Os01g38520
Target Sequence 
GACGCCTACCTCTGCTTGGAGATCGCCGCCGTCTGCCTCCAGAAGCTCGGCGCGCCCGTCGGTAACTGATCCTCTCTCCC
CTCTCCGGCGAGCCTACCATTTGTCGTGTTCGTCACTAGAATGATCGTGGTGGTGGTCACGAATCTGATCGATCTTGCAT
GCTTACGAGCGATGATTAGTCAGGTCAGGTCTAAGTGATGGGTTTAGTGTAGTTAATCGTTGGATTACAGGATTAGTGCT
AATGCAGATACGGTATATGCCTCAGTCAGTATGTCGTAATGGAATAATCTCTAGTAGTGTCGTGGTATTATGGTAAGTAG
GTGTTGATGGGAGCTTGTTGCATGGTGACGGTATTACTTGGATCATCGGATTGCGGACTTGAGAAAATTGAGATGTGTGG
TTTGGTTTCTGACTGTTTGGGACTATTTGATGATTTTACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis