Browse Element(s) Details


Os.31403.1.S1_at

Description gb:AK107390.1
DB_XREF= gi:32992599
TID=Os.31403.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0694A04.24 (P0694A04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C11, full insert sequence.
FL= gb:AK107390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4691011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46880NANA1+27071548..27075595retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46890Os.40855.2.S1_x_at10/111+27077298..27078947hypothetical protein
LOC_Os01g46890Os.40855.4.S1_x_at4/111+27077298..27078947hypothetical protein
LOC_Os01g46890Os.40855.4.S1_at1/111+27077298..27078947hypothetical protein
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31403.1.S1_at--566--8371Chr01:27094993..27095017 (25 bp)
GGCGTCCTTAACTTGGAGCAGAAGC
LOC_Os01g46910
Os.31403.1.S1_at--700--2651Chr01:27094972..27094996 (25 bp)
AAGCCGGAGAAAGGCATCTTCGCCA
LOC_Os01g46910
Os.31403.1.S1_at--670--711Chr01:27094878..27094902 (25 bp)
ATGATGTTGGTGTATCTGCCGGAGA
LOC_Os01g46910
Os.31403.1.S1_at--448--313Chr05:4731655..4731679 (25 bp)
ATACCTCACAAATAATGCCATGGAA
NONE
Os.31403.1.S1_at--423--10131Chr01:27094756..27094780 (25 bp)
TATGCCATCTAGGAGTATTAGTACT
LOC_Os01g46910
Os.31403.1.S1_at--238--371Chr01:27094683..27094707 (25 bp)
ATCAAGGCTAGAGATGGAATCCTGT
LOC_Os01g46910
Os.31403.1.S1_at--143--8171Chr01:27094668..27094692 (25 bp)
GGAATCCTGTTTTGGCTAAACCGCT
LOC_Os01g46910
Os.31403.1.S1_at--157--3731Chr01:27094653..27094677 (25 bp)
CTAAACCGCTTTGATCTCTGCATAT
LOC_Os01g46910
Os.31403.1.S1_at--102--2031Chr01:27094612..27094636 (25 bp)
ACTAGCATGACTACCAAGGCTGTTT
LOC_Os01g46910
Os.31403.1.S1_at--705--911Chr01:27094596..27094620 (25 bp)
AGGCTGTTTGGTGCACACTCCCTTT
LOC_Os01g46910
Os.31403.1.S1_at--138--3311Chr01:27094583..27094607 (25 bp)
CACACTCCCTTTTGCGTAGTATGTA
LOC_Os01g46910
Target Sequence 
GGCGTCCTTAACTTGGAGCAGAAGCCGGAGAAAGGCATCTTCGCCAACTTGGAGGAGCAGCACATGGATGGCATTGAACA
GCTGGTCGGTGGGGAGGAGGTGGCTGGCCTACAAGATGATGTTGGTGTATCTGCCGGAGATGGGGGCGTCGACGAATTTG
CTGAAATTCGCGAAAGTATGTTACGGATTTTACTTCCCCTGTACTTCACCATACCTCACAAATAATGCCATGGAAGATAT
GCCATCTAGGAGTATTAGTACTAATATCACTAGGAGTAAGACATATTAGTATTGCATTAATAATGAGGAGATCAAGGCTA
GAGATGGAATCCTGTTTTGGCTAAACCGCTTTGATCTCTGCATATATGTAAAAAATGAAGAACTAGCATGACTACCAAGG
CTGTTTGGTGCACACTCCCTTTTGCGTAGTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis