Browse Element(s) Details


Os.52748.1.S1_at

Description gb:AK069050.1
DB_XREF= gi:32979074
TID=Os.52748.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003I21, full insert sequence.
FL= gb:AK069050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4693211/11Vacuolar protein sorting protein 25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52748.1.S1_at--421--2711Chr01:27112103..27112127 (25 bp)
AAGCATACCTACAAAACCCTCCTGT
LOC_Os01g46932
Os.52748.1.S1_at--131--3251Chr01:27112100..27112124 (25 bp)
CATACCTACAAAACCCTCCTGTTGT
LOC_Os01g46932
Os.52748.1.S1_at--867--7451Chr01:27112074..27112098 (25 bp)
GTGTGATAAAACTAGGAACTTGTCT
LOC_Os01g46932
Os.52748.1.S1_at--479--2411Chr01:27112067..27112091 (25 bp)
AAAACTAGGAACTTGTCTTGCATCT
LOC_Os01g46932
Os.52748.1.S1_at--240--2511Chr01:27112065..27112089 (25 bp)
AACTAGGAACTTGTCTTGCATCTCA
LOC_Os01g46932
Os.52748.1.S1_at--639--2031Chr01:27112064..27112088 (25 bp)
ACTAGGAACTTGTCTTGCATCTCAT
LOC_Os01g46932
Os.52748.1.S1_at--759--10091Chr01:27112062..27112086 (25 bp)
TAGGAACTTGTCTTGCATCTCATGC
LOC_Os01g46932
Os.52748.1.S1_at--496--951Chr01:27112061..27112085 (25 bp)
AGGAACTTGTCTTGCATCTCATGCA
LOC_Os01g46932
Os.52748.1.S1_at--257--5491Chr01:27112059..27112083 (25 bp)
GAACTTGTCTTGCATCTCATGCAAA
LOC_Os01g46932
Os.52748.1.S1_at--314--2071Chr01:27112057..27112081 (25 bp)
ACTTGTCTTGCATCTCATGCAAATA
LOC_Os01g46932
Os.52748.1.S1_at--712--4971Chr01:27112048..27112072 (25 bp)
GCATCTCATGCAAATAAATTTTCTA
LOC_Os01g46932
Target Sequence 
AAGCATACCTACAAAACCCTCCTGTTGTTGTGTGATAAAACTAGGAACTTGTCTTGCATCTCATGCAAATAAATTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis