Browse Element(s) Details


Os.413.1.S1_at

Description gb:AY333184.1
DB_XREF= gi:33465886
TID=Os.413.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.413 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) G-box binding protein mRNA, complete cds.
PROD=G-box binding protein
FL= gb:AY333184.1 gb:U42208.1 gb:AK121925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4697011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g46990OsAffx.11495.1.S1_at7/111+27155924..27157849hypothetical protein
LOC_Os01g46990OsAffx.21433.1.S1_at4/111+27155924..27157849hypothetical protein
LOC_Os01g46990Os.56448.1.S1_at1/111+27155924..27157849hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.413.1.S1_at--601--10751Chr01:27127672..27127696 (25 bp)
TTGAGCTATTGACTGCGGAGAACAC
LOC_Os01g46970
Os.413.1.S1_at--798--4671Chr01:27127658..27127682 (25 bp)
GCGGAGAACACATCCCTTAGACGTG
LOC_Os01g46970
Os.413.1.S1_at--61--2751Chr01:27127439..27127463 (25 bp)
AAGAAGTGCCTCCAGTCAAAACAAA
LOC_Os01g46970
Os.413.1.S1_at--929--6211Chr01:27127400..27127424 (25 bp)
GAGGCGTCGAAAATTTCCTGTCAAT
LOC_Os01g46970
Os.413.1.S1_at--678--5071Chr01:27127349..27127373 (25 bp)
GCAGCGGGCACATGGATCATGCCAT
LOC_Os01g46970
Os.413.1.S1_at--824--4091Chr01:27127283..27127307 (25 bp)
CGACTGATGCTGTAGCCGCAAGGTA
LOC_Os01g46970
Os.413.1.S1_at--1127--9731Chr01:27127260..27127284 (25 bp)
TAATCTTAACGACTTGACCCTCCCG
LOC_Os01g46970
Os.413.1.S1_at--489--2371Chr01:27127223..27127247 (25 bp)
AAACGCAGCATGTGGCCTGGTGAAT
LOC_Os01g46970
Os.413.1.S1_at--766--3111Chr01:27127201..27127225 (25 bp)
AATTTTATAAGCTCAACCTGCCCGC
LOC_Os01g46970
Os.413.1.S1_at--829--10811Chr01:27127146..27127170 (25 bp)
TTGTCACTGTATTCGCCCTTGTAAA
LOC_Os01g46970
Os.413.1.S1_at--892--6951Chr01:27127115..27127139 (25 bp)
GTAGCTGCCTTTTAGACGAGCATTC
LOC_Os01g46970
Target Sequence 
TTGAGCTATTGACTGCGGAGAACACATCCCTTAGACGTGAAATAAGCAGGCTAACGGAAAGCTCCAAGAAACTTAGATTA
GAGAATTCTGCTCTAATGGAGAAACTAACGGAAACCGGGCCTGATGAAGCACAAGAAGTGCCTCCAGTCAAAACAAAAGC
ACAGCAAGCTCGAGGCGTCGAAAATTTCCTGTCAATGATAGACAAGACTGGCACGCCGAGAAGCAGCGGGCACATGGATC
ATGCCATTGCCACGCCCAAGCTTCGTCAACTCCTGGGCTCTGGTCTGGCGACTGATGCTGTAGCCGCAAGGTAATCTTAA
CGACTTGACCCTCCCGCCGTTCGTGCTNCAAACGCAGCATGTGGCCTGGTGAATTTTATAAGCTCAACCTGCCCGCACGA
TTAACATCGAAGTATTAGGTACGATTTTGTCACTGTATTCGCCCTTGTAAATTACTAGTAGCTGCCTTTTAGACGAGCAT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis