Browse Element(s) Details


OsAffx.21433.1.S1_at

Description gb:NM_192461.1
DB_XREF= gi:34912005
GEN=P0684E06.11
TID=OsAffx.21433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0684E06.11 (P0684E06.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g469904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g46990OsAffx.11495.1.S1_at7/111+27155924..27157849hypothetical protein
LOC_Os01g46990OsAffx.21433.1.S1_at4/111+27155924..27157849hypothetical protein
LOC_Os01g46990Os.56448.1.S1_at1/111+27155924..27157849hypothetical protein
LOC_Os01g47000Os.35344.3.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000Os.35344.18.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000OsAffx.22940.5.S1_x_at2/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47010OsAffx.820.1.S1_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.820.1.S1_x_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.23695.1.S1_at9/111+27172837..27173998hypothetical protein
LOC_Os01g47020NANA1+27177191..27180428transposon protein, putative, unclassified
LOC_Os01g47030NANA1+27181058..27187216transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21433.1.S1_at--216--7811Chr01:27157929..27157949 (21 bp)
GGTCGTGTTACAAGTCACAGCTAGC
NONE
OsAffx.21433.1.S1_at--381--6531Chr01:27157901..27157925 (25 bp)
GATTTTATTTACTTCCCGCAAGAGA
NONE
OsAffx.21433.1.S1_at--393--71Chr01:27157874..27157898 (25 bp)
ATTGCAGCCGTTTTGTAGCCATCAA
NONE
OsAffx.21433.1.S1_at--326--10831Chr01:27157846..27157870 (25 bp)
TTGTGCACCACAGAGCCAACAATGG
NONE
OsAffx.21433.1.S1_at--150--3511NONE
CATGACCTGCTTACAATGGACGTGC
NONE
OsAffx.21433.1.S1_at--704--2231Chr01:27156702..27156723 (22 bp)
ACAATGGACGTGCATGTGGCTGCAT
LOC_Os01g46990
OsAffx.21433.1.S1_at--1117--7531Chr01:27156687..27156711 (25 bp)
GTGGCTGCATGGGAACTTGCATTGC
LOC_Os01g46990
OsAffx.21433.1.S1_at--109--2071Chr01:27156673..27156697 (25 bp)
ACTTGCATTGCATGGAACTTGTTTG
LOC_Os01g46990
OsAffx.21433.1.S1_at--804--2511Chr01:27156658..27156682 (25 bp)
AACTTGTTTGCAGCGAGATAGGCTC
LOC_Os01g46990
OsAffx.21433.1.S1_at--581--10171Chr01:27154685..27154709 (25 bp)
TATACTACTCTCACGTACTGTACTC
NONE
OsAffx.21433.1.S1_at--409--9911Chr01:27154665..27154689 (25 bp)
TACTCCTACTAGAAGTACTCCACTC
NONE
Target Sequence 
GGTCGTGTTACAAGTCACAGCTAGCTGGGATTTTATTTACTTCCCGCAAGAGACTATTGCAGCCGTTTTGTAGCCATCAA
CTATTGTGCACCACAGAGCCAACAATGGCTGTCTACTGCCATGACCTGCTTACAATGGACGTGCATGTGGCTGCATGGGA
ACTTGCATTGCATGGAACTTGTTTGCAGCGAGATAGGCTCGTTGCAAAGCGCCTAGCTGCAGCAATGTGGAGTAGCTTGG
TGTATTTTAAAGCTTTGAACTGCTACAAAGGCGAAAAGCTGGAGTACGTGTTTGTATATACTACTCTCACGTACTGTACT
CCTACTAGAAGTACTCCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis