Browse Element(s) Details


OsAffx.820.1.S1_x_at

Description gb:NM_192463.1
DB_XREF= gi:34912009
GEN=P0684E06.14
TID=OsAffx.820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0684E06.14 (P0684E06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4701011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46990OsAffx.11495.1.S1_at7/111+27155924..27157849hypothetical protein
LOC_Os01g46990OsAffx.21433.1.S1_at4/111+27155924..27157849hypothetical protein
LOC_Os01g46990Os.56448.1.S1_at1/111+27155924..27157849hypothetical protein
LOC_Os01g47000Os.35344.3.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000Os.35344.18.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000OsAffx.22940.5.S1_x_at2/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47010OsAffx.820.1.S1_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.820.1.S1_x_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.23695.1.S1_at9/111+27172837..27173998hypothetical protein
LOC_Os01g47020NANA1+27177191..27180428transposon protein, putative, unclassified
LOC_Os01g47030NANA1+27181058..27187216transposon protein, putative, unclassified
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.820.1.S1_x_at--464--5151Chr01:27173848..27173872 (25 bp)
GCAACGGCTGGCGACGCTGCAACGA
LOC_Os01g47010
OsAffx.820.1.S1_x_at--655--4711Chr01:27173842..27173866 (25 bp)
GCTGGCGACGCTGCAACGACTTCAG
LOC_Os01g47010
OsAffx.820.1.S1_x_at--1130--4751Chr01:27173833..27173857 (25 bp)
GCTGCAACGACTTCAGCCGGCGGTG
LOC_Os01g47010
OsAffx.820.1.S1_x_at--510--4231Chr01:27173817..27173841 (25 bp)
CCGGCGGTGGGCACGGGCGGAGATG
LOC_Os01g47010
OsAffx.820.1.S1_x_at--1143--1851Chr01:27173789..27173813 (25 bp)
ACGACGACGGCGAGCTCTGCGCAGA
LOC_Os01g47010
OsAffx.820.1.S1_x_at--441--5911Chr01:27173778..27173802 (25 bp)
GAGCTCTGCGCAGATCCAGCGTGAT
LOC_Os01g47010
OsAffx.820.1.S1_x_at--218--1591Chr01:27173777..27173801 (25 bp)
AGCTCTGCGCAGATCCAGCGTGATG
LOC_Os01g47010
OsAffx.820.1.S1_x_at--577--3771Chr01:27173775..27173799 (25 bp)
CTCTGCGCAGATCCAGCGTGATGGC
LOC_Os01g47010
OsAffx.820.1.S1_x_at--950--9151Chr01:27173772..27173796 (25 bp)
TGCGCAGATCCAGCGTGATGGCGCT
LOC_Os01g47010
OsAffx.820.1.S1_x_at--26--5051Chr01:27173769..27173793 (25 bp)
GCAGATCCAGCGTGATGGCGCTGCA
LOC_Os01g47010
OsAffx.820.1.S1_x_at--754--1291Chr01:27173767..27173791 (25 bp)
AGATCCAGCGTGATGGCGCTGCAGA
LOC_Os01g47010
Target Sequence 
GCAACGGCTGGCGACGCTGCAACGACTTCAGCCGGCGGTGGGCACGGGCGGAGATGGGGACGACGACGGCGAGCTCTGCG
CAGATCCAGCGTGATGGCGCTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.820.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis