Browse Element(s) Details


Os.56448.1.S1_at

Description gb:AK110030.1
DB_XREF= gi:32995239
TID=Os.56448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-160-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-160-A08, full insert sequence.
FL= gb:AK110030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g469901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g46990OsAffx.11495.1.S1_at7/111+27155924..27157849hypothetical protein
LOC_Os01g46990OsAffx.21433.1.S1_at4/111+27155924..27157849hypothetical protein
LOC_Os01g46990Os.56448.1.S1_at1/111+27155924..27157849hypothetical protein
LOC_Os01g47000Os.35344.3.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000Os.35344.18.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000OsAffx.22940.5.S1_x_at2/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47010OsAffx.820.1.S1_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.820.1.S1_x_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.23695.1.S1_at9/111+27172837..27173998hypothetical protein
LOC_Os01g47020NANA1+27177191..27180428transposon protein, putative, unclassified
LOC_Os01g47030NANA1+27181058..27187216transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56448.1.S1_at--25--9151NONE
TGCGTGTGCCAAGCCTGTTGAGCGA
NONE
Os.56448.1.S1_at--795--1651NONE
AGCGCGGAGATCTCAATCGCCTCTT
NONE
Os.56448.1.S1_at--1086--2591NONE
AACGCCTACCGTTGGTTCGTGCTGA
NONE
Os.56448.1.S1_at--241--9611NONE
TCATCATCACGATCCTCGTATGCTT
NONE
Os.56448.1.S1_at--240--6891NONE
GTATGCTTCCTGCTCGACTATGGAG
NONE
Os.56448.1.S1_at--565--10111NONE
TATGGAGTCGTCATGACACTCACTC
NONE
Os.56448.1.S1_at--66--6191NONE
GAGGACGAGATGCAAGCGCACCACC
NONE
Os.56448.1.S1_at--215--3771NONE
CTCTCACTTCCCAAGGCTATTTGAA
NONE
Os.56448.1.S1_at--163--211NONE
ATTTGAAAGCCGCATCACATTGTTT
NONE
Os.56448.1.S1_at--379--9671NONE
TCACATTGTTTTTGCCGTTCGAGAG
NONE
Os.56448.1.S1_at--490--4091Chr01:27156071..27156586 (25 bp)
CGAAAAGCTGTCTCTTTCTCTCTCT
LOC_Os01g46990
Target Sequence 
TGCGTGTGCCAAGCCTGTTGAGCGAGCTGCAAGCCTACCGCGAGCAGCGCGGAGATCTCAATCGCCTCTTCGCGCATTCC
GTGTGGGCGCTGCTGCTGTGTCTGCCCCTGCCCTGGATCCTGACGGGTGGCGGCGCCGCGGGCGTATGGGGCACACATAT
CATCTACTCCGCTTCCCTGCCGATCATTGCACTCACCTCCTTCCTGCTGACGGCCCTGCTGCTGATCCTGCTCAACGCCT
ACCGTTGGTTCGTGCTGAAGCCGGTGGCTCTGGCAGCCGCCCTCTTCGTCATCATCACGATCCTCGTATGCTTCCTGCTC
GACTATGGAGTCGTCATGACACTCACTCCACCCTTCTGCGGACAGGCACAAGCGGACTGATGATGGAAGGAGGACGAGAT
GCAAGCGCACCACCGCCACTACCACCAGCCACACACACACACATACACACACAACACAGAACCAATCAGCTCTCACTTCC
CAAGGCTATTTGAAAGCCGCATCACATTGTTTTTGCCGTTCGAGAGCGAAAAGCTGTCTCTTTCTCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis