Browse Element(s) Details


Os.37449.1.S1_x_at

Description gb:AK058491.1
DB_XREF= gi:32968509
TID=Os.37449.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0694A04.27 (P0694A04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E03, full insert sequence.
FL= gb:AK058491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4693210/11Vacuolar protein sorting protein 25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37449.1.S1_x_at--1135--10631Chr01:27114078..27114102 (25 bp)
TTCCCATTGTTCTCCAATCCAAAGA
LOC_Os01g46932
Os.37449.1.S1_x_at--440--92Chr05:28104770..28104919 (24 bp)
ATTCCTTGCTGCTCTTGTTTATGAA
NONE
Os.37449.1.S1_x_at--740--7631NONE
GGGACTGAACTTGCCGGAATTGACC
NONE
Os.37449.1.S1_x_at--1037--10751Chr01:27112415..27112439 (25 bp)
TTGACCGTGGTGTTCTCATGAGGGC
LOC_Os01g46932
Os.37449.1.S1_x_at--16--1511Chr01:27112363..27112387 (25 bp)
AGCAGCGATTTTTAAGGGCACTTCA
LOC_Os01g46932
Os.37449.1.S1_x_at--352--7531Chr01:27112291..27112315 (25 bp)
GTGGCAGATCAATTATCCTGACCAG
LOC_Os01g46932
Os.37449.1.S1_x_at--104--9271Chr01:27112276..27112300 (25 bp)
TCCTGACCAGCATCTTTGAATGACG
LOC_Os01g46932
Os.37449.1.S1_x_at--1028--8931Chr01:27112256..27112280 (25 bp)
TGACGAGAATTCTTGCCAACCAGGA
LOC_Os01g46932
Os.37449.1.S1_x_at--437--10211Chr01:27112207..27112231 (25 bp)
TATTTATCTGCCTTACTGTTCACTG
LOC_Os01g46932
Os.37449.1.S1_x_at--661--9111Chr01:27112184..27112208 (25 bp)
TGCTGCTGCTGTTAAATGCCATGTT
LOC_Os01g46932
Os.37449.1.S1_x_at--1134--8811Chr01:27112163..27112187 (25 bp)
TGTTGGCCTGTCCATCTTTGACTGA
LOC_Os01g46932
Target Sequence 
TTCCCATTGTTCTCCAATCCAAAGATCGAGAGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTA
TGAAGGACGTGCAGAATGGATGGACAAAGGTNANNNNNANTGNNNNNNNNNNTNGTNNNNNNNNNNNNNNNGNNNTANNT
NCANNNNNNNNNNNACGTGGGACTGAACTTGCCGGAATTGACCGTGGTGTTCTCATGAGGGCTTTGAAGTTACTGGAACA
GAAGGGCAAAGCAGCGATTTTTAAGGGCACTTCAGCTGATGATGAAGGTGTAAAATTTTCGGCTTAGTGTCTGGGGCCTG
TGTGGCAGATCAATTATCCTGACCAGCATCTTTGAATGACGAGAATTCTTGCCAACCAGGACGCTGATCACGTCCTCCCC
AAACATATTTATCTGCCTTACTGTTCACTGCTGCTGCTGTTAAATGCCATGTTGGCCTGTCCATCTTTGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37449.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis