Browse Element(s) Details


Os.52748.1.S1_x_at

Description gb:AK069050.1
DB_XREF= gi:32979074
TID=Os.52748.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003I21, full insert sequence.
FL= gb:AK069050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4693211/11Vacuolar protein sorting protein 25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52748.1.S1_x_at--755--4451Chr01:27113589..27113613 (25 bp)
GCCTCATTCTTTGGTTGCGGATACA
LOC_Os01g46932
Os.52748.1.S1_x_at--1033--1771Chr01:27112412..27112436 (25 bp)
ACCGTGGTGTTCTCATGAGGGCTTT
LOC_Os01g46932
Os.52748.1.S1_x_at--204--8271Chr01:27112289..27112313 (25 bp)
GGCAGATCAATTATCCTGACCAGCA
LOC_Os01g46932
Os.52748.1.S1_x_at--159--3011Chr01:27112258..27112282 (25 bp)
AATGACGAGAATTCTTGCCAACCAG
LOC_Os01g46932
Os.52748.1.S1_x_at--269--10691Chr01:27112244..27112268 (25 bp)
TTGCCAACCAGGACGCTGATCACGT
LOC_Os01g46932
Os.52748.1.S1_x_at--68--7231Chr01:27112221..27112245 (25 bp)
GTCCTCCCCAAACATATTTATCTGC
LOC_Os01g46932
Os.52748.1.S1_x_at--436--10211Chr01:27112207..27112231 (25 bp)
TATTTATCTGCCTTACTGTTCACTG
LOC_Os01g46932
Os.52748.1.S1_x_at--358--10471Chr01:27112195..27112219 (25 bp)
TTACTGTTCACTGCTGCTGCTGTTA
LOC_Os01g46932
Os.52748.1.S1_x_at--420--2711Chr01:27112103..27112127 (25 bp)
AAGCATACCTACAAAACCCTCCTGT
LOC_Os01g46932
Os.52748.1.S1_x_at--474--2431Chr01:27112091..27112115 (25 bp)
AAAACCCTCCTGTTGTTGTGTGATA
LOC_Os01g46932
Os.52748.1.S1_x_at--758--10091Chr01:27112062..27112086 (25 bp)
TAGGAACTTGTCTTGCATCTCATGC
LOC_Os01g46932
Target Sequence 
GCCTCATTCTTTGGTTGCGGATACAAGATTGGGCTAACTACATATTAAATTTTGTAAAGGATAATGGGCTGGAAGATAGT
GTAATGACTGTTGAAGAAATACGTTNNGGAATTGAAACACGTGGGNCTGAACTTGCNGGAATNGACCGTGGTGTTCTCAT
GAGGGCTTTGAAGTTACTGGAACAGAAGGGCAAANCAGCGATTTTTAAGGGCACTTCAGNTNATGANGAAGGTGTAAAAT
TTTCGGCTTANTGTCTGGGGCCTGTGTGGCAGATCAATTATCCTGACCAGCATCTTTNAATGACGAGAATTCTTGCCAAC
CAGGACGCTGATCACGTCCTCCCCAAACATATTTATCTGCCTTACTGTTCACTGCTGCTGCTGTTAAATGCCATGNTGGC
CNNTCCATCTTTGACTGAAAAAACACTGTAATCAGAACTTAATTCATTTCCACAAGCATACCTACAAAACCCTCCTGTTG
TTGTGTGATAAAACTAGGAACTTGTCTTGCATCTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52748.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis