Browse Element(s) Details


Os.31497.1.S1_at

Description gb:AK107240.1
DB_XREF= gi:32992449
TID=Os.31497.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gag-pol precursor (OSJNBa0051C19.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F04, full insert sequence.
FL= gb:AK107240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3251011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g127401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g231101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32526Os.8207.1.S1_at2/113+18557959..18563602expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31497.1.S1_at--669--6251Chr03:18539465..18539489 (25 bp)
GATGTCCGCCGATCGTCAATAGGCA
LOC_Os03g32510
Os.31497.1.S1_at--176--7071Chr03:18539479..18539503 (25 bp)
GTCAATAGGCAGCAAAAGCCGTAGT
LOC_Os03g32510
Os.31497.1.S1_at--446--10073Chr03:18539500..18539524 (25 bp)
TAGTCCAAAAACTACTCAGGGCTGG
LOC_Os03g32510
Os.31497.1.S1_at--540--5791Chr03:18539596..18539620 (25 bp)
GACGCATGTGTGTAGATTTCACGGA
LOC_Os03g32510
Os.31497.1.S1_at--198--3691Chr03:18539653..18539677 (25 bp)
CTTTGCCGTGGATCGATCAGCTCAT
LOC_Os03g32510
Os.31497.1.S1_at--1080--4031Chr03:18539666..18539690 (25 bp)
CGATCAGCTCATGGATTCAACAACT
LOC_Os03g32510
Os.31497.1.S1_at--260--2471Chr03:18539684..18539708 (25 bp)
AACAACTGGGCGAGGATGCCTAGCA
LOC_Os03g32510
Os.31497.1.S1_at--390--3894Chr06:11813236..11813256 (21 bp)
CTGGGCGAGGATGCCTAGCATACTA
NONE
Os.31497.1.S1_at--1038--7974Chr06:11813240..11813264 (25 bp)
GGATGCCTAGCATACTAAATGATTG
NONE
Os.31497.1.S1_at--678--2994Chr06:11813257..11813281 (25 bp)
AATGATTGACACAATTCATGCTATG
NONE
Os.31497.1.S1_at--295--10533Chr06:11813271..11813295 (25 bp)
TTCATGCTATGTTACTCCTTTCGTC
NONE
Target Sequence 
GATGTCCGCCGATCGTCAATAGGCAGCAAAAGCCGTAGTCCAAAAACTACTCAGGGCTGGGGTTATTCAAGAGATCGACC
ACCCAGAGTGGCTGGCGAACCCAGTACTGGTGCGGAAGTCAAACGGCAAATGACGCATGTGTGTAGATTTCACGGACCTG
AACAAAGCATGTCCAAAGGACGATTTCCCTTTGCCGTGGATCGATCAGCTCATGGATTCAACAACTGGGCGAGGATGCCT
AGCATACTAAATGATTGACACAATTCATGCTATGTTACTCCTTTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis