Browse Element(s) Details


Os.31497.2.S1_x_at

Description gb:NM_184662.1
DB_XREF= gi:34896413
GEN=OSJNBa0051C19.13
TID=Os.31497.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31497 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol precursor (OSJNBa0051C19.13), mRNA.
PROD=putative gag-pol precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3251011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g156406/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g231103/11retrotransposon protein, putative, unclassified
LOC_Os07g140601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g131901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g114801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g110401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g161901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g241101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g116201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g276301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g131501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g176401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g241101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g430201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g139201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g258101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g220101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g306701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g204301/11transposon protein, putative, unclassified
LOC_Os04g189001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g180401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g253601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g150101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g353901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g332301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g229901/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g164601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32526Os.8207.1.S1_at2/113+18557959..18563602expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31497.2.S1_x_at--694--84529Chr12:26690588..26690612 (25 bp)
TGGCCAAGCACTTTTGCTGATAGCT
LOC_Os12g43020
Os.31497.2.S1_x_at--289--7153Chr06:8859148..8859172 (25 bp)
GTCTTCGGCCGCGTCAAAAGGCGAT
LOC_Os06g15640
Os.31497.2.S1_x_at--65--4634Chr06:8859168..8859191 (24 bp)
GCGATCTAGCCATAATCAACAGGGC
LOC_Os06g15640
Os.31497.2.S1_x_at--925--3073Chr03:18539161..18539185 (25 bp)
AATCAACAGGGCTGTGCACAATGTC
LOC_Os03g32510
Os.31497.2.S1_x_at--482--2653Chr06:8859207..8859231 (25 bp)
AAGCCGAATTGCACAGCCGGCCGAA
LOC_Os06g15640
Os.31497.2.S1_x_at--1039--8331Chr03:18539205..18539229 (25 bp)
GGCCGAAACACGTGCCAAAGCCAAC
LOC_Os03g32510
Os.31497.2.S1_x_at--463--1692Chr06:8859248..8859267 (20 bp)
AGCCAACCCCGCATGACAAAATAGT
LOC_Os06g15640
Os.31497.2.S1_x_at--517--3092Chr06:8859262..8859286 (25 bp)
AATAGTAAAAGTGCAGATTGACCAT
LOC_Os06g15640
Os.31497.2.S1_x_at--89--3611Chr03:18539350..18539374 (25 bp)
CATTGATATTTTCGCCTGGAGCTCC
LOC_Os03g32510
Os.31497.2.S1_x_at--570--10191Chr03:18539356..18539380 (25 bp)
TATTTTCGCCTGGAGCTCCGATGAA
LOC_Os03g32510
Os.31497.2.S1_x_at--1019--10631Chr03:18539360..18539384 (25 bp)
TTCGCCTGGAGCTCCGATGAAGTGG
LOC_Os03g32510
Target Sequence 
TGGCCAAGCACTTTTGCTGATAGCTTTCGGCTCGGGAGAAAACAGACGCGAAGAGCAAGTACTGTTCGACGTCGTTGACA
TCCCGTACAACTACAATGCCATCCTCGGCCGTGCGACCCTGAACAAGTTCGAAGCCATTTCCCACCACAACTATCTCAAG
CTCAAGATGCCCGGCCCAGCGGGAGTGATAGTGGTTAAGGGGCTTCAGTCTTCGGCCGCGTCAAAAGGCGATCTAGCCAT
AATCAACAGGGCTGTGCACAATGTCGAAGCCGAATTGCACAGCCGGCCGAAACACGTGCCAAAGCCAACCCCGCATGACA
AAATAGTAAAAGTGCAGATTGACCATGCCGACCCCGCAAAGCTCGTATCACTGGGGGACGGCATGGGCGAACAAGAAGCT
GAGGGCATCCTAGCGGTGCTCAAAAAGAACATTGATATTTTCGCCTGGAGCTCCGATGAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31497.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis