Browse Element(s) Details


Os.31503.1.S1_x_at

Description gb:AK063543.1
DB_XREF= gi:32973561
TID=Os.31503.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C12, full insert sequence.
FL= gb:AK063543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3084011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30790Os.52080.1.S1_at11/113+17505881..17511210SPFH domain protein 2 precursor, putative, expressed
LOC_Os03g30800OsAffx.3375.1.S1_at9/113+17513606..17516003fumarylacetoacetate hydrolase family protein
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31503.1.S1_x_at--26--6211Chr03:17531485..17531509 (25 bp)
GAGGCACGAGGCAGCGGATCCGGAG
LOC_Os03g30840
Os.31503.1.S1_x_at--380--8631Chr03:17531839..17531863 (25 bp)
TGGTGGTTCTCATCGGCCACTTCAA
LOC_Os03g30840
Os.31503.1.S1_x_at--1083--2033Chr10:15197284..15197303 (20 bp)
ACTTCAAGGATGACGACGGCAACCT
NONE
Os.31503.1.S1_x_at--560--8231Chr03:17531874..17531898 (25 bp)
GGCAACCTCGAGTCGAGTGCGACAA
LOC_Os03g30840
Os.31503.1.S1_x_at--534--5751Chr03:17531906..17531930 (25 bp)
GACGGGTTCGCTTGGGCCAACGGCG
LOC_Os03g30840
Os.31503.1.S1_x_at--154--4491Chr03:17531931..17531955 (25 bp)
GCCGGCGGATTTTTGTGATGATGAT
LOC_Os03g30840
Os.31503.1.S1_x_at--1147--6291Chr03:17531950..17531974 (25 bp)
GATGATGTCTTGTGATGCTTCAGCT
LOC_Os03g30840
Os.31503.1.S1_x_at--189--8871Chr03:17531962..17531986 (25 bp)
TGATGCTTCAGCTGTTAATGTGTTG
LOC_Os03g30840
Os.31503.1.S1_x_at--915--7411Chr03:17531981..17532005 (25 bp)
GTGTTGATATTTGTGACGCTGGAAT
LOC_Os03g30840
Os.31503.1.S1_x_at--998--211Chr03:17531989..17532013 (25 bp)
ATTTGTGACGCTGGAATGCTATGTT
LOC_Os03g30840
Os.31503.1.S1_x_at--470--5272Chr05:1908636..1908660 (25 bp)
GAATGCTATGTTAATGTCCATTTTC
NONE
Target Sequence 
GAGGCACGAGGCAGCGGATCCGGAGGAGACGTCAGGGCGGCGGATCCAGCGACAGGGAGTGCGCGAGGTGGCGGATCCAG
CGACGGATGTGGCGGCGGCAACTCCATCCGGCGGCGGATCCACCGCAGCCAAGTCCCCGCTCCTCCCTCCTCCCCTTCCC
CTGCCGTCACCACCCCCTCTCCCTTTCTCAGATCTGGCACGCGGGGAGTGGTGGAGGCTGCGGCGGGGCTCTGCAACGGC
AGTGGCGAGGCGGAGGCGGTGGAGGCCGGTGGGGCTCGGCAGCAGCGGCGTCGAGGCGGAGGCGGTGGAGGCCGACAGGG
CTCGGCTGCAGCGGCGTTGAGGCAGATCCGGCGGTGGTGGTTCTCATCGGCCACTTCAAGGATGACGACGGCAACCTCGA
GTCGAGTGCGACAACGCCGGCGACGGGTTCGCTTGGGCCAACGGCGGCCGGCGGATTTTTGTGATGATGATGTCTTGTGA
TGCTTCAGCTGTTAATGTGTTGATATTTGTGACGCTGGAATGCTATGTTAATGTCCATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31503.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis