Browse Element(s) Details


Os.26892.1.A1_at

Description gb:AK101473.1
DB_XREF= gi:32986682
TID=Os.26892.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040L03, full insert sequence.
FL= gb:AK101473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3089011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed
LOC_Os03g30934Os.18984.1.S1_at10/113+17571154..17577125expressed protein
LOC_Os03g30934OsAffx.3376.1.S1_at8/113+17571154..17577125expressed protein
LOC_Os03g30950Os.18462.1.S1_at11/113+17578411..17579996Acyl-desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26892.1.A1_at--925--351Chr03:17557832..17557856 (25 bp)
ATCAAAACGTGTCTCGAGTGCGAGG
LOC_Os03g30890
Os.26892.1.A1_at--73--9231Chr03:17557875..17557899 (25 bp)
TCCAGAGTGGATCAGCAGCCTGCAA
LOC_Os03g30890
Os.26892.1.A1_at--350--6591Chr03:17558083..17558107 (25 bp)
GATTGCAGGCTAAGTGGCCAGTTCA
LOC_Os03g30890
Os.26892.1.A1_at--258--8431Chr03:17558098..17558122 (25 bp)
GGCCAGTTCAACTACACGCAAGTAA
LOC_Os03g30890
Os.26892.1.A1_at--918--2451Chr03:17558124..17558148 (25 bp)
AACAATGATCACACTGGCTGTCGCG
LOC_Os03g30890
Os.26892.1.A1_at--715--8211Chr03:17558184..17558208 (25 bp)
GGAATCTATAGTGCAGCTGCTCCTT
LOC_Os03g30890
Os.26892.1.A1_at--465--5071Chr03:17558196..17558220 (25 bp)
GCAGCTGCTCCTTTTGGTTGATGAA
LOC_Os03g30890
Os.26892.1.A1_at--232--5031Chr03:17558228..17558252 (25 bp)
GCAGTAATGTTCTATGTCCTGAGAT
LOC_Os03g30890
Os.26892.1.A1_at--858--2871Chr03:17558259..17558283 (25 bp)
AAGGTGGACAACTGGACACGCCAAG
LOC_Os03g30890
Os.26892.1.A1_at--23--5611Chr03:17558334..17558358 (25 bp)
GAAATTCGGAAACTCTTGTACTTCA
LOC_Os03g30890
Os.26892.1.A1_at--940--6991Chr03:17558351..17558375 (25 bp)
GTACTTCAAACTCTAGGCATTCATT
LOC_Os03g30890
Target Sequence 
ATCAAAACGTGTCTCGAGTGCGAGGGACCATAGGTTACATTGCTCCAGAGTGGATCAGCAGCCTGCAAATTACTGCAAAA
GTTGATGTGNATAGCTATGGANTTNNGCTGCTTGAGCTGGTGTCAGGAAAGCGAGTTCTGGATTNGGCTACAANTGCTAA
TGAGGAGGTGCATGTAGTGCTCAGGAGGCTTGTAAANATGTTTGNCAATAACTTGAGTGGAAATGAACCATCTTGGATTG
CGGAGTTTGTGGATTGCAGGCTAAGTGGCCAGTTCAACTACACGCAAGTAAGAACAATGATCACACTGGCTGTCGCGTGC
TTGGATGAAGAACGAAGCAAAAGGCCAACAATGGAATCTATAGTGCAGCTGCTCCTTTTGGTTGATGAATCTTGTAGCAG
TAATGTTCTATGTCCTGAGATGNCAACAAGGTGGACAACTGGACACGCCAAGGCAAATGCAAGTTTTTGTATTCATAGTT
TGTAGTTCTATCTCATTGTATGGAAATTCGGAAACTCTTGTACTTCAAACTCTAGGCATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26892.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis