Browse Element(s) Details


OsAffx.13136.1.S1_at

Description tigr:9631.m03024
TID=OsAffx.13136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3085011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30790Os.52080.1.S1_at11/113+17505881..17511210SPFH domain protein 2 precursor, putative, expressed
LOC_Os03g30800OsAffx.3375.1.S1_at9/113+17513606..17516003fumarylacetoacetate hydrolase family protein
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13136.1.S1_at--824--1511Chr03:17536107..17536131 (25 bp)
AGCAGGAGGCCGCACGGTGTGGAGG
LOC_Os03g30850
OsAffx.13136.1.S1_at--209--331Chr03:17536151..17536175 (25 bp)
AAGGTTGGTGGGAGCCCACGGCACG
LOC_Os03g30850
OsAffx.13136.1.S1_at--1111--3371Chr03:17536182..17536206 (25 bp)
CAGCCGGTGGTATCGGAAGGCCGAC
LOC_Os03g30850
OsAffx.13136.1.S1_at--672--5291Chr03:17536197..17536221 (25 bp)
GAAGGCCGACATGGTACATGCGACC
LOC_Os03g30850
OsAffx.13136.1.S1_at--100--5671Chr03:17536204..17536228 (25 bp)
GACATGGTACATGCGACCGTCGAAA
LOC_Os03g30850
OsAffx.13136.1.S1_at--568--1771Chr03:17536219..17536243 (25 bp)
ACCGTCGAAAGGTCGTCATGGTGCA
LOC_Os03g30850
OsAffx.13136.1.S1_at--433--5571Chr03:17536225..17536249 (25 bp)
GAAAGGTCGTCATGGTGCAAACAAC
LOC_Os03g30850
OsAffx.13136.1.S1_at--290--7791Chr03:17536229..17536253 (25 bp)
GGTCGTCATGGTGCAAACAACAGGG
LOC_Os03g30850
OsAffx.13136.1.S1_at--238--5111Chr03:17536254..17536278 (25 bp)
GCACGGATGAGAGGACGGTGCTCCG
LOC_Os03g30850
OsAffx.13136.1.S1_at--830--9031Chr03:17536272..17536296 (25 bp)
TGCTCCGGCGGGAGTTCCACCGTGA
LOC_Os03g30850
OsAffx.13136.1.S1_at--48--1791Chr03:17536290..17536314 (25 bp)
ACCGTGAGCGACGATGCGAGGCGAC
LOC_Os03g30850
Target Sequence 
AGCAGGAGGCCGCACGGTGTGGAGGGTGCAGCTGGTGTGGTACAAAGGTTGGTGGGAGCCCACGGCACGGAGGCGCAGCC
GGTGGTATCGGAAGGCCGACATGGTACATGCGACCGTCGAAAGGTCGTCATGGTGCAAACAACAGGGGCACGGATGAGAG
GACGGTGCTCCGGCGGGAGTTCCACCGTGAGCGACGATGCGAGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis