Browse Element(s) Details


Os.52080.1.S1_at

Description gb:AK103193.1
DB_XREF= gi:32988402
TID=Os.52080.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121P04, full insert sequence.
FL= gb:AK064680.1 gb:AK103193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3079011/11SPFH domain protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified
LOC_Os03g30770OsAffx.25307.1.S1_at11/113+17502979..17503386hypothetical protein
LOC_Os03g30780OsAffx.13135.1.S1_at7/113+17503853..17504585expressed protein
LOC_Os03g30790Os.52080.1.S1_at11/113+17505881..17511210SPFH domain protein 2 precursor, putative, expressed
LOC_Os03g30800OsAffx.3375.1.S1_at9/113+17513606..17516003fumarylacetoacetate hydrolase family protein
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52080.1.S1_at--955--3131Chr03:17506453..17506477 (25 bp)
AATTACCTCGACAATGGTTCCACCA
LOC_Os03g30790
Os.52080.1.S1_at--354--1531Chr03:17506410..17506434 (25 bp)
AGCAGTTGTCTCTGTGAATTGCAAA
LOC_Os03g30790
Os.52080.1.S1_at--733--2071Chr03:17506383..17506407 (25 bp)
ACATTGGCTGTTTTTCTGATCCCAC
LOC_Os03g30790
Os.52080.1.S1_at--440--151Chr03:17506352..17506376 (25 bp)
ATTAGGATTCTCACGGATCTGCTCA
LOC_Os03g30790
Os.52080.1.S1_at--518--1931Chr03:17506340..17506364 (25 bp)
ACGGATCTGCTCACTACTTGGTAAA
LOC_Os03g30790
Os.52080.1.S1_at--770--8551Chr03:17506242..17506266 (25 bp)
TGGAGTAATCGTTTTGCGTGCGTGC
LOC_Os03g30790
Os.52080.1.S1_at--404--6351Chr03:17506187..17506211 (25 bp)
GATGCGCTATCTTGTGCAATCTGCA
LOC_Os03g30790
Os.52080.1.S1_at--507--8071Chr03:17506133..17506157 (25 bp)
GGAGCACTATGATTTCCAAGTTCAG
LOC_Os03g30790
Os.52080.1.S1_at--20--2791Chr03:17506082..17506106 (25 bp)
AAGATCGGGCATTACTTGATACAGT
LOC_Os03g30790
Os.52080.1.S1_at--727--1191Chr03:17506060..17506084 (25 bp)
AGTAGTCTCAGCGATCGACACAGCA
LOC_Os03g30790
Os.52080.1.S1_at--1032--2551Chr03:17506033..17506057 (25 bp)
AACTGTGTGAAGCTATATACTCCTA
LOC_Os03g30790
Target Sequence 
AATTACCTCGACAATGGTTCCACCAAGGACCATTTGGAAATATAGCAGTTGTCTCTGTGAATTGCAAAGAACATTGGCTG
TTTTTCTGATCCCACGGGGAAATTAGGATTCTCACGGATCTGCTCACTACTTGGTAAAGCCAAAAGGACTAGACATTAGG
GCCTTTTAAAGATGGAAATTAGTAGTCTACTGTAGTAGCATAGCTGGAGGCTGGAGTAATCGTTTTGCGTGCGTGCGTAG
GAGCTGGGAGTTACGTTAGATCACTAGATGCGCTATCTTGTGCAATCTGCAGAACTGATGGACAGGAACAAATGCTATCA
GGAGCACTATGATTTCCAAGTTCAGAAAAGGTTCTACGAGTACAAATGGGAAAGATCGGGCATTACTTGATACAGTAGTC
TCAGCGATCGACACAGCACTAACTGTGTGAAGCTATATACTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis