Browse Element(s) Details


OsAffx.13135.1.S1_at

Description tigr:9631.m03017
TID=OsAffx.13135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g307807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30750OsAffx.25306.1.S1_at10/113+17478662..17480741hypothetical protein
LOC_Os03g30750OsAffx.32287.1.S1_x_at1/113+17478662..17480741hypothetical protein
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified
LOC_Os03g30770OsAffx.25307.1.S1_at11/113+17502979..17503386hypothetical protein
LOC_Os03g30780OsAffx.13135.1.S1_at7/113+17503853..17504585expressed protein
LOC_Os03g30790Os.52080.1.S1_at11/113+17505881..17511210SPFH domain protein 2 precursor, putative, expressed
LOC_Os03g30800OsAffx.3375.1.S1_at9/113+17513606..17516003fumarylacetoacetate hydrolase family protein
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13135.1.S1_at--199--3791Chr03:17504101..17504125 (25 bp)
CTCGTCCAGCACGAGCTGGATCGAG
LOC_Os03g30780
OsAffx.13135.1.S1_at--507--1871Chr03:17504111..17504135 (25 bp)
ACGAGCTGGATCGAGGACAAGGCCC
LOC_Os03g30780
OsAffx.13135.1.S1_at--432--10091Chr03:17504176..17504200 (25 bp)
TAGGATCGCGCCGTCCAGCAACGAG
LOC_Os03g30780
OsAffx.13135.1.S1_at--453--1471Chr03:17504192..17504216 (25 bp)
AGCAACGAGTCCTGGGTCCAGGAGC
LOC_Os03g30780
OsAffx.13135.1.S1_at--746--8571Chr03:17504204..17504228 (25 bp)
TGGGTCCAGGAGCAGAAGCCATCCA
LOC_Os03g30780
OsAffx.13135.1.S1_at--973--5931Chr03:17504213..17504237 (25 bp)
GAGCAGAAGCCATCCAGCTCCGTTG
LOC_Os03g30780
OsAffx.13135.1.S1_at--232--5951Chr03:17504297..17504321 (25 bp)
GAGAAGAAGTCCAGGTTCCACCGCG
LOC_Os03g30780
OsAffx.13135.1.S1_at--332--6291NONE
GATGTTCGCCGGTCGATGTATGGTA
NONE
OsAffx.13135.1.S1_at--470--9331Chr03:17504921..17504940 (20 bp)
TCGCCGGTCGATGTATGGTATTTGA
NONE
OsAffx.13135.1.S1_at--1060--4051Chr03:17504924..17504948 (25 bp)
CGATGTATGGTATTTGACGGGATGA
NONE
OsAffx.13135.1.S1_at--615--5751Chr03:17504958..17504982 (25 bp)
GACGGGTCGCTGTTCGTAGTCGAGG
NONE
Target Sequence 
CTCGTCCAGCACGAGCTGGATCGAGGACAAGGCCCGGGCCAACGCTGCTCCCACTCATCTCTGCGGCGGCGAGAGTAGGA
TCGCGCCGTCCAGCAACGAGTCCTGGGTCCAGGAGCAGAAGCCATCCAGCTCCGTTGCCGGCGCCGGTGAGAGAAAGTTG
GCCGACGGCGACGGGCTCCTCTTTGCCGGCGCCGGTGAGAAGAAGTCCAGGTTCCACCGCGGCGACGGCAACGGCAAGAA
CCTGGAGGAGATGTTCGCCGGTCGATGTATGGTATTTGACGGGATGATGGTGAGGCGACGGGTCGCTGTTCGTAGTCGAG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis