Browse Element(s) Details


OsAffx.3375.1.S1_at

Description tigr:9631.m03019
TID=OsAffx.3375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=fumarylacetoacetate hydrolase family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g308009/11fumarylacetoacetate hydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified
LOC_Os03g30770OsAffx.25307.1.S1_at11/113+17502979..17503386hypothetical protein
LOC_Os03g30780OsAffx.13135.1.S1_at7/113+17503853..17504585expressed protein
LOC_Os03g30790Os.52080.1.S1_at11/113+17505881..17511210SPFH domain protein 2 precursor, putative, expressed
LOC_Os03g30800OsAffx.3375.1.S1_at9/113+17513606..17516003fumarylacetoacetate hydrolase family protein
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3375.1.S1_at--368--771Chr03:17513990..17514014 (25 bp)
ATGTCCCCGAGGCATCTGCCATGGA
LOC_Os03g30800
OsAffx.3375.1.S1_at--141--6211Chr03:17513998..17514022 (25 bp)
GAGGCATCTGCCATGGACTTCGTCG
LOC_Os03g30800
OsAffx.3375.1.S1_at--1090--8271Chr03:17514000..17514024 (25 bp)
GGCATCTGCCATGGACTTCGTCGGA
LOC_Os03g30800
OsAffx.3375.1.S1_at--1085--5151Chr03:17514983..17515007 (25 bp)
GCAAGAGAATTTCAATCTGCTGCTA
LOC_Os03g30800
OsAffx.3375.1.S1_at--710--4751NONE
GCTGCTAAGCCTTTATACCACTTTC
NONE
OsAffx.3375.1.S1_at--1147--9751NONE
TAAGCCTTTATACCACTTTCTTCCT
NONE
OsAffx.3375.1.S1_at--82--4451Chr03:17515541..17515565 (25 bp)
GCCTTTATACCACTTTCTTCCTCAT
LOC_Os03g30800
OsAffx.3375.1.S1_at--106--10331Chr03:17515554..17515578 (25 bp)
TTTCTTCCTCATTGTCGTGCTCCTC
LOC_Os03g30800
OsAffx.3375.1.S1_at--27--8431Chr03:17515853..17515877 (25 bp)
GGCCGGGCGCGACGATGACATGGCA
LOC_Os03g30800
OsAffx.3375.1.S1_at--149--5791Chr03:17515925..17515949 (25 bp)
GACGACGACCATTCGAAACAGAGCA
LOC_Os03g30800
OsAffx.3375.1.S1_at--39--5791Chr03:17515928..17515952 (25 bp)
GACGACCATTCGAAACAGAGCAGAG
LOC_Os03g30800
Target Sequence 
ATGTCCCCGAGGCATCTGCCATGGACTTCGTCGGAGGTTATGCGCTTGCTTTGGACATGACAGCAAGAGAATTTCAATCT
GCTGCTAAGCCTTTATACCACTTTCTTCCTCATTGTCGTGCTCCTCCACTTCCCCAATCCCCTTTTGCTTGCGGCAGCGG
CAGGGGTGGCCGTCCGCGGCGACGGCAGGGCGGCGGTGGCCGGGCGCGGCGACGACGGGGCGGCGGTGGCTGGGGGAGGC
GACGACGGGGCGGCGGTGGCTGCGCGCGGCGACTGCGGGGCGGCGGTGGCTGTGCGCGGCGAGGAGGGGGCGGTGGCTTG
CGCGGCGACAGGGCGGCGGTGGCTGTGCGCGGCGAGGACGGGGCGGCGGTGGCCGTGGGCGGCGAGGACGGGCGGGCGGT
GGCCGGGCGCGACGATGACATGGCAGCGGTGGCTAGCGACGGTGGCGGCAGCCTGCTCGCGATGACGACCTCGACGACGA
CCATTCGAAACAGAGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis