Browse Element(s) Details


OsAffx.25306.1.S1_at

Description tigr:9631.m03014
TID=OsAffx.25306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3075010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30710Os.56292.1.S1_x_at2/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.27691.1.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.56292.1.S1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710OsAffx.30013.5.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.44554.1.A1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30720NANA3+17463193..17464386retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.19695.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730Os.57082.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.29554.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30740Os.22569.1.S1_at11/113+17469962..17476789expressed protein
LOC_Os03g30740OsAffx.13134.1.S1_at10/113+17469962..17476789expressed protein
LOC_Os03g30744OsAffx.25305.1.S1_at11/113+17476680..17477102hypothetical protein
LOC_Os03g30750OsAffx.25306.1.S1_at10/113+17478662..17480741hypothetical protein
LOC_Os03g30750OsAffx.32287.1.S1_x_at1/113+17478662..17480741hypothetical protein
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified
LOC_Os03g30770OsAffx.25307.1.S1_at11/113+17502979..17503386hypothetical protein
LOC_Os03g30780OsAffx.13135.1.S1_at7/113+17503853..17504585expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25306.1.S1_at--488--1171Chr03:17480683..17480707 (25 bp)
AGTCAAATCCTATACGCGCTCAGCA
LOC_Os03g30750
OsAffx.25306.1.S1_at--579--131Chr03:17480450..17480474 (25 bp)
ATTAAGGGTGATTTCGCAAACAACA
LOC_Os03g30750
OsAffx.25306.1.S1_at--1063--2191Chr03:17480431..17480455 (25 bp)
ACAACAAGACATGTTCCAAGCATGA
LOC_Os03g30750
OsAffx.25306.1.S1_at--668--2711Chr03:17480414..17480438 (25 bp)
AAGCATGAATTGGATCCAGGTGATG
LOC_Os03g30750
OsAffx.25306.1.S1_at--642--6051NONE
GAGATTGATTGGACGGTTGTCAAAT
NONE
OsAffx.25306.1.S1_at--399--5751Chr03:17478761..17478782 (22 bp)
GACGGTTGTCAAATGGGTTGGATTC
LOC_Os03g30750
OsAffx.25306.1.S1_at--568--7811Chr03:17478746..17478770 (25 bp)
GGTTGGATTCTTCTTGTCCGCCCGG
LOC_Os03g30750
OsAffx.25306.1.S1_at--557--7251Chr03:17478731..17478755 (25 bp)
GTCCGCCCGGGCAAGCACATGTGGT
LOC_Os03g30750
OsAffx.25306.1.S1_at--1076--1491Chr03:17478718..17478742 (25 bp)
AGCACATGTGGTTCACAGCTCAGGA
LOC_Os03g30750
OsAffx.25306.1.S1_at--373--9691Chr03:17478706..17478730 (25 bp)
TCACAGCTCAGGAACAACACGGTCT
LOC_Os03g30750
OsAffx.25306.1.S1_at--543--3271Chr03:17478692..17478716 (25 bp)
CAACACGGTCTGTTTAGCTGAGGGT
LOC_Os03g30750
Target Sequence 
AGTCAAATCCTATACGCGCTCAGCATCATGGGGTCCAGATTAAGGGTGATTTCGCAAACAACAAGACATGTTCCAAGCAT
GAATTGGATCCAGGTGATGAGATTGATTGGACGGTTGTCAAATGGGTTGGATTCTTCTTGTCCGCCCGGGCAAGCACATG
TGGTTCACAGCTCAGGAACAACACGGTCTGTTTAGCTGAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis