Browse Element(s) Details


OsAffx.13134.1.S1_at

Description tigr:9631.m03012
TID=OsAffx.13134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3074010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30700OsAffx.661.1.S1_x_at1/113+17442787..17445432retrotransposon protein, putative, unclassified
LOC_Os03g30710Os.56292.1.S1_x_at2/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.27691.1.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.56292.1.S1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710OsAffx.30013.5.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.44554.1.A1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30720NANA3+17463193..17464386retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.19695.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730Os.57082.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.29554.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30740Os.22569.1.S1_at11/113+17469962..17476789expressed protein
LOC_Os03g30740OsAffx.13134.1.S1_at10/113+17469962..17476789expressed protein
LOC_Os03g30744OsAffx.25305.1.S1_at11/113+17476680..17477102hypothetical protein
LOC_Os03g30750OsAffx.25306.1.S1_at10/113+17478662..17480741hypothetical protein
LOC_Os03g30750OsAffx.32287.1.S1_x_at1/113+17478662..17480741hypothetical protein
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13134.1.S1_at--254--9911Chr03:17473840..17473864 (25 bp)
TACTCTGATGACCTACATTACGCGC
LOC_Os03g30740
OsAffx.13134.1.S1_at--79--10471Chr03:17473823..17473847 (25 bp)
TTACGCGCACATTCAGTCATTACTG
LOC_Os03g30740
OsAffx.13134.1.S1_at--243--151NONE
ATTACTGGACTGCAGCTGGTGGTTC
NONE
OsAffx.13134.1.S1_at--1143--9591Chr03:17472619..17472643 (25 bp)
TCATTTGTTATACTTGTGGCTTTGG
LOC_Os03g30740
OsAffx.13134.1.S1_at--713--9871Chr03:17472609..17472633 (25 bp)
TACTTGTGGCTTTGGAGATCTGGGA
LOC_Os03g30740
OsAffx.13134.1.S1_at--903--1091Chr03:17472571..17472595 (25 bp)
AGTGTGTTTGATGGCATAAGTCCTA
LOC_Os03g30740
OsAffx.13134.1.S1_at--460--351Chr03:17472556..17472580 (25 bp)
ATAAGTCCTAGTGTGATGTCTGTAG
LOC_Os03g30740
OsAffx.13134.1.S1_at--53--751Chr03:17472541..17472565 (25 bp)
ATGTCTGTAGTACAAGCAGTAGCAA
LOC_Os03g30740
OsAffx.13134.1.S1_at--160--5031Chr03:17472526..17472550 (25 bp)
GCAGTAGCAAATGAAAGTGCCCTTT
LOC_Os03g30740
OsAffx.13134.1.S1_at--375--1091Chr03:17472511..17472535 (25 bp)
AGTGCCCTTTTGTGCTTGGTTGGAG
LOC_Os03g30740
OsAffx.13134.1.S1_at--786--10611Chr03:17472497..17472520 (24 bp)
TTGGTTGGAGCTTCTAAGCTCCGGG
LOC_Os03g30740
Target Sequence 
TACTCTGATGACCTACATTACGCGCACATTCAGTCATTACTGGACTGCAGCTGGTGGTTCAGGGTAGTGAGAGATGTTGA
AAAGGACTTAAAGAAAGATTTCAATTCATTTGTTATACTTGTGGCTTTGGAGATCTGGGAGCATAGGAATGGTAGTGTGT
TTGATGGCATAAGTCCTAGTGTGATGTCTGTAGTACAAGCAGTAGCAAATGAAAGTGCCCTTTTGTGCTTGGTTGGAGCT
TCTAAGCTCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis