Browse Element(s) Details


Os.22569.1.S1_at

Description gb:AK073684.1
DB_XREF= gi:32983707
TID=Os.22569.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060C22, full insert sequence.
FL= gb:AK073684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3074011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30700OsAffx.661.1.S1_x_at1/113+17442787..17445432retrotransposon protein, putative, unclassified
LOC_Os03g30710Os.56292.1.S1_x_at2/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.27691.1.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.56292.1.S1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710OsAffx.30013.5.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.44554.1.A1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30720NANA3+17463193..17464386retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.19695.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730Os.57082.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.29554.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30740Os.22569.1.S1_at11/113+17469962..17476789expressed protein
LOC_Os03g30740OsAffx.13134.1.S1_at10/113+17469962..17476789expressed protein
LOC_Os03g30744OsAffx.25305.1.S1_at11/113+17476680..17477102hypothetical protein
LOC_Os03g30750OsAffx.25306.1.S1_at10/113+17478662..17480741hypothetical protein
LOC_Os03g30750OsAffx.32287.1.S1_x_at1/113+17478662..17480741hypothetical protein
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22569.1.S1_at--385--1771Chr03:17471185..17471404 (25 bp)
ACCTGATTCCCAGTGGATTGATGGA
LOC_Os03g30740
Os.22569.1.S1_at--169--2851Chr03:17471115..17471139 (25 bp)
AAGTCTATGCCATTTGGTTCCATTT
LOC_Os03g30740
Os.22569.1.S1_at--859--7891Chr03:17471100..17471124 (25 bp)
GGTTCCATTTCTGCATGACCTCTTG
LOC_Os03g30740
Os.22569.1.S1_at--1022--3751Chr03:17471081..17471105 (25 bp)
CTCTTGCTTTCCTTGGGCATAGTGA
LOC_Os03g30740
Os.22569.1.S1_at--48--7491Chr03:17470255..17470279 (25 bp)
GTGTGGCTGACTCCATGGATAACTG
LOC_Os03g30740
Os.22569.1.S1_at--272--6191Chr03:17470229..17470253 (25 bp)
GAGGACGCGTTTGATCTATTTGATC
LOC_Os03g30740
Os.22569.1.S1_at--8--8031Chr03:17470167..17470191 (25 bp)
GGAGGATTCCGGCTTATAGGACAAT
LOC_Os03g30740
Os.22569.1.S1_at--222--5351Chr03:17470115..17470139 (25 bp)
GAACCACCGATCTGTAAAACTGCAT
LOC_Os03g30740
Os.22569.1.S1_at--1104--1971Chr03:17470097..17470121 (25 bp)
ACTGCATGTTAGTCTCACAGATTGT
LOC_Os03g30740
Os.22569.1.S1_at--809--2631Chr03:17470063..17470087 (25 bp)
AACCAACTATGCACTGTTTGTTATG
LOC_Os03g30740
Os.22569.1.S1_at--180--2491Chr03:17470032..17470056 (25 bp)
AACAGATCAGCCCTAGTACTTTTAT
LOC_Os03g30740
Target Sequence 
ACCTGATTCCCAGTGGATTGATGGAGAGAGCTACTTATGGGGTGTCTTTGTGGATCCCAAGANGANGCATAAGTCTATGC
CATTTGGTTCCATTTCTGCATGACCTCTTGCTTTCCTTGGGCATAGTGAAAGGTGTGGCTGACTCCATGGATAACTGAGA
GGACGCGTTTGATCTATTTGATCACATGGCTGAAGGGAGGAATCTTGAATTGATGATTTGGGAGGATTCCGGCTTATAGG
ACAATAAATAATCGTTGTTTGGTTCAGAAATTGAACCACCGATCTGTAAAACTGCATGTTAGTCTCACAGATTGTTGGAA
TTACAACCAACTATGCACTGTTTGTTATGTTGTAGAACAGATCAGCCCTAGTACTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis