Browse Element(s) Details


OsAffx.13137.1.S1_at

Description tigr:9631.m03030
TID=OsAffx.13137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3091011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed
LOC_Os03g30934Os.18984.1.S1_at10/113+17571154..17577125expressed protein
LOC_Os03g30934OsAffx.3376.1.S1_at8/113+17571154..17577125expressed protein
LOC_Os03g30950Os.18462.1.S1_at11/113+17578411..17579996Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os03g30970OsAffx.447.1.S1_at4/113+17586969..17588429retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13137.1.S1_at--29--6471Chr03:17562117..17562141 (25 bp)
GATAAGTTACCTGCTAGTTTCATTG
LOC_Os03g30910
OsAffx.13137.1.S1_at--116--5211Chr03:17562149..17562173 (25 bp)
GAATTTGGTCCATTTCCGTTCAGGT
LOC_Os03g30910
OsAffx.13137.1.S1_at--1086--11Chr03:17562270..17562294 (25 bp)
ATTGGCTGCTTGATGCAACTGGAGA
LOC_Os03g30910
OsAffx.13137.1.S1_at--1078--5391Chr03:17562293..17562317 (25 bp)
GAAGCTCTGCATATGGTCACGCGAT
LOC_Os03g30910
OsAffx.13137.1.S1_at--29--1151Chr03:17562340..17562364 (25 bp)
AGTCCCTACTCACCGTCATTGAGAA
LOC_Os03g30910
OsAffx.13137.1.S1_at--155--8911Chr03:17562359..17562383 (25 bp)
TGAGAACTTAAGCAGGCGCCTCCTG
LOC_Os03g30910
OsAffx.13137.1.S1_at--971--8791Chr03:17562414..17562438 (25 bp)
TGTTCTTTGCCACTTGATTTCTCAT
LOC_Os03g30910
OsAffx.13137.1.S1_at--70--3831Chr03:17562456..17562480 (25 bp)
CTGCGAAGCCTCCTGTTATATGGAA
LOC_Os03g30910
OsAffx.13137.1.S1_at--27--8011Chr03:17562502..17562526 (25 bp)
GGATGGCATCGCTGGATAACCTTGT
LOC_Os03g30910
OsAffx.13137.1.S1_at--802--2691Chr03:17562582..17562606 (25 bp)
AAGCTCCCACGATTGTTTTCTCTTA
LOC_Os03g30910
OsAffx.13137.1.S1_at--22--10391Chr03:17562597..17562621 (25 bp)
TTTTCTCTTAGACTGTGGTTTGCAT
LOC_Os03g30910
Target Sequence 
GATAAGTTACCTGCTAGTTTCATTGAACTGGAGAATTTGGTCCATTTCCGTTCAGGTTCTACCTACTTGCCGCATGGCTT
TGGGAGAATGAAAAGCATACTAACATTGGGATTGATAGAGATCTCAGATGACACATCTTGGAGGATACAAGAAATTGGCT
GCTTGATGCAACTGGAGAAGCTCTGCATATGGTCACGCGATGGCATGAACAAGGAGAACTGGGAGTCCCTACTCACCGTC
ATTGAGAACTTAAGCAGGCGCCTCCTGTCACTCTCAATTGAAACGGACAGGAGAACTTGTTCTTTGCCACTTGATTTCTC
ATCCTCCCCACCTCTTCTCCTGCGAAGCCTCCTGTTATATGGAAGTTTGGAAGCATTGCCAAGTTGGATGGCATCGCTGG
ATAACCTTGTGAAATTAACTCTTGGTGGTACTAAATTAGAGGAGGATGATATACAGATTCTCCAGAAGCTCCCACGATTG
TTTTCTCTTAGACTGTGGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis