Browse Element(s) Details


Os.18462.1.S1_at

Description gb:AK070282.1
DB_XREF= gi:32980306
TID=Os.18462.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047A21, full insert sequence.
FL= gb:AK070282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3095011/11Acyl-desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed
LOC_Os03g30934Os.18984.1.S1_at10/113+17571154..17577125expressed protein
LOC_Os03g30934OsAffx.3376.1.S1_at8/113+17571154..17577125expressed protein
LOC_Os03g30950Os.18462.1.S1_at11/113+17578411..17579996Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os03g30970OsAffx.447.1.S1_at4/113+17586969..17588429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30980OsAffx.31069.2.S1_x_at1/113+17598927..17602595hypothetical protein
LOC_Os03g30990OsAffx.20387.1.S1_x_at2/113+17603551..17609415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30990OsAffx.10632.1.S1_at1/113+17603551..17609415retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0006952biological_processdefense response
GO:0008610biological_processlipid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0042742biological_processdefense response to bacteria
GO:0004768molecular_functionstearoyl-CoA 9-desaturase activity
GO:0045300molecular_functionacyl-[acyl-carrier protein] desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18462.1.S1_at--549--9971Chr03:17578740..17578764 (25 bp)
TACCTGTGCGGGTTGGCGCCCAAGA
LOC_Os03g30950
Os.18462.1.S1_at--806--871Chr03:17578662..17578686 (25 bp)
ATGGCCCGTTTCAGCTGGATCTTCG
LOC_Os03g30950
Os.18462.1.S1_at--353--8571Chr03:17578647..17578671 (25 bp)
TGGATCTTCGATAGGCCCGTCATGC
LOC_Os03g30950
Os.18462.1.S1_at--858--7111Chr03:17578629..17578653 (25 bp)
GTCATGCTGGGCTGATCAACCCGGG
LOC_Os03g30950
Os.18462.1.S1_at--93--10031Chr03:17578588..17578612 (25 bp)
TATGGGCCCGTTTACTGGGCTCTGC
LOC_Os03g30950
Os.18462.1.S1_at--540--8651Chr03:17578573..17578597 (25 bp)
TGGGCTCTGCTTGCTCAAATTATAA
LOC_Os03g30950
Os.18462.1.S1_at--989--4831Chr03:17578545..17578569 (25 bp)
GCTACATCGTGTGCTAAAATAATTT
LOC_Os03g30950
Os.18462.1.S1_at--48--1011Chr03:17578507..17578531 (25 bp)
AGGATTCGTGTGAGAAAGCTATTTT
LOC_Os03g30950
Os.18462.1.S1_at--533--8991Chr03:17578444..17578468 (25 bp)
TGAAGCGGCAGGACGACTGCCATTT
LOC_Os03g30950
Os.18462.1.S1_at--191--8111Chr03:17578434..17578458 (25 bp)
GGACGACTGCCATTTGATTAAGAAA
LOC_Os03g30950
Os.18462.1.S1_at--830--9771Chr03:17578416..17578440 (25 bp)
TAAGAAAAGACTCGCGCTTGTTTGT
LOC_Os03g30950
Target Sequence 
TACCTGTGCGGGTTGGCGCCCAAGATCCGGAGGATGGAGGAGCTGGCCCACCGGAGGGCGGCCCGCATCGAGCCCGCNAT
GGCCCGTTTCAGCTGGATCTTCGATAGGCCCGTCATGCTGGGCTGATCAACCCGGGGCTTCNGTTATGGTTTTATGGGCC
CGTTTACTGGGCTCTGCTTGCTCAAATTATAATAAGCTACATCGTGTGCTAAAATAATTTATCTTTGTTATTAAGGATTC
GTGTGAGAAAGCTATTTTGTTTTCTGTAGCAAGTTTAGGAATGTAATGTAATGTAATGAAGCGGCAGGACGACTGCCATT
TGATTAAGAAAAGACTCGCGCTTGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis