Browse Element(s) Details


Os.52888.1.S1_at

Description gb:AK069736.1
DB_XREF= gi:32979760
TID=Os.52888.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031J08, full insert sequence.
FL= gb:AK069736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3092011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed
LOC_Os03g30934Os.18984.1.S1_at10/113+17571154..17577125expressed protein
LOC_Os03g30934OsAffx.3376.1.S1_at8/113+17571154..17577125expressed protein
LOC_Os03g30950Os.18462.1.S1_at11/113+17578411..17579996Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os03g30970OsAffx.447.1.S1_at4/113+17586969..17588429retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52888.1.S1_at--185--9611Chr03:17567969..17567993 (25 bp)
TCATCTTCTCTCAAGCTGTTTCAGG
LOC_Os03g30920
Os.52888.1.S1_at--435--6831Chr03:17567986..17568010 (25 bp)
GTTTCAGGCTGCATCCTTCGAGGAG
LOC_Os03g30920
Os.52888.1.S1_at--924--5231Chr03:17568018..17568042 (25 bp)
GAATACACCTTGTGGCATTCCGGAT
LOC_Os03g30920
Os.52888.1.S1_at--989--4931Chr03:17568032..17568056 (25 bp)
GCATTCCGGATGTACTTGTAGCACA
LOC_Os03g30920
Os.52888.1.S1_at--889--6951Chr03:17568049..17568073 (25 bp)
GTAGCACATTTGACTGCTCCTGACT
LOC_Os03g30920
Os.52888.1.S1_at--446--4791Chr03:17568064..17568088 (25 bp)
GCTCCTGACTGCATTCTGATGATGG
LOC_Os03g30920
Os.52888.1.S1_at--882--8771Chr03:17568138..17568162 (25 bp)
TGTTCTTGCCCACCGAAAGGATACA
LOC_Os03g30920
Os.52888.1.S1_at--867--6551Chr03:17568199..17568223 (25 bp)
GATTACATCGACAGCAACGCAGCAC
LOC_Os03g30920
Os.52888.1.S1_at--196--4131Chr03:17568216..17568240 (25 bp)
CGCAGCACGGGCATTGGCATATGAA
LOC_Os03g30920
Os.52888.1.S1_at--707--8051Chr03:17568375..17568399 (25 bp)
GGAGACTGAAATTCTTTGGCTCTTA
LOC_Os03g30920
Os.52888.1.S1_at--640--10851Chr03:17568390..17568414 (25 bp)
TTGGCTCTTAGACATGCTTGATTGG
LOC_Os03g30920
Target Sequence 
TCATCTTCTCTCAAGCTGTTTCAGGCTGCATCCTTCGAGGAGGTCTGCAGAATACACCTTGTGGCATTCCGGATGTACTT
GTAGCACATTTGACTGCTCCTGACTGCATTCTGATGATGGAGGTTGAACCCAAGCTGGAAATAACTATGGGGCCATCCAT
CACTGTGTCTGTTCTTGCCCACCGAAAGGATACAAAGAAGATGGCTTGCGTCATTAATAAGTCAACTTTTGATTACATCG
ACAGCAACGCAGCACGGGCATTGGCATATGAATATCTCCAGTTTTCACCAAGATACCCTTTTATATCAGACATCCGAGCA
TGGATGTCTTTGCTTTTCCTGTACAAAGGAACAAACGTCATCGAAGTATTTGGTATAGAGCTAGACTTTTGTGATGCAGC
AAGGTCGGAGACTGAAATTCTTTGGCTCTTAGACATGCTTGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis