Browse Element(s) Details


Os.31513.1.S1_at

Description gb:AK072025.1
DB_XREF= gi:32982048
TID=Os.31513.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxisomal Ca-dependent solute carrier protein (P0019D06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104N14, full insert sequence.
FL= gb:AK072025.1 gb:AK107219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0499011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04970OsAffx.10911.1.S1_at4/111+2325426..2325658hypothetical protein
LOC_Os01g04980NANA1+2333726..2336866transposon protein, putative, unclassified
LOC_Os01g04990Os.31513.1.S1_at11/111+2346870..2350304Mitochondrial carrier protein, expressed
LOC_Os01g05000OsAffx.1934.1.S1_at11/111+2352985..2353847hypothetical protein
LOC_Os01g05010Os.1625.1.S1_at11/111+2354653..2357239Mitochondrial glycoprotein, expressed
LOC_Os01g05020OsAffx.23117.1.S1_at11/111+2358601..2360616hypothetical protein
LOC_Os01g05030Os.43764.1.A1_at9/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.2.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.7.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.25967.2.S1_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.3.S1_x_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05040OsAffx.10912.1.S1_x_at11/111+2366331..2368118hypothetical protein
LOC_Os01g05050OsAffx.10571.1.S1_at11/111+2369125..2370868Mitochondrial glycoprotein
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31513.1.S1_at--412--2771Chr01:2347559..2347583 (25 bp)
AAGATTCCCCTGCAGTTGTTAGTTT
LOC_Os01g04990
Os.31513.1.S1_at--244--7871Chr01:2347380..2347539 (25 bp)
GGTATTGCATCATCTACTGCCACAT
LOC_Os01g04990
Os.31513.1.S1_at--632--3311Chr01:2347360..2347384 (25 bp)
CACATTTCCCCTTGATCTTGTAAAG
LOC_Os01g04990
Os.31513.1.S1_at--285--4731Chr01:2347311..2347335 (25 bp)
GCTGGGACATCGTCAGTCTGTAAAT
LOC_Os01g04990
Os.31513.1.S1_at--769--1731Chr01:2347272..2347296 (25 bp)
ACCATCCGCCAAATCTTTCAGAAGG
LOC_Os01g04990
Os.31513.1.S1_at--1121--2911Chr01:2347251..2347275 (25 bp)
AAGGAAGGCCTTCGTGGCTTCTACA
LOC_Os01g04990
Os.31513.1.S1_at--1024--6491Chr01:2347222..2347246 (25 bp)
GATAGTCCCTGAGTACCTGAAGGTT
LOC_Os01g04990
Os.31513.1.S1_at--355--1071Chr01:2347186..2347210 (25 bp)
AGGGATTGCCTTCATGACCTATGAG
LOC_Os01g04990
Os.31513.1.S1_at--154--5371Chr01:2347156..2347180 (25 bp)
GAAGAGCTTGCTCTCCAGCATAGAC
LOC_Os01g04990
Os.31513.1.S1_at--768--2991Chr01:2346946..2346970 (25 bp)
AATGAGTATTCCATCCGTGTACACC
LOC_Os01g04990
Os.31513.1.S1_at--835--9391Chr01:2346895..2346919 (25 bp)
TCGTAAGATGTAACGCCCCTTGCAA
LOC_Os01g04990
Target Sequence 
AAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGAT
CTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCG
CCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAG
GGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTAC
AAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAG
ACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAA
TGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis