Browse Element(s) Details


Os.31647.1.S1_at

Description gb:AK106981.1
DB_XREF= gi:32992190
TID=Os.31647.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0407H12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H08, full insert sequence.
FL= gb:AK106981.1 gb:AK069124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1316011/11expressed protein
LOC_Os07g3429010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13130Os.27066.1.A1_x_at3/117+7514025..7517183hypothetical protein
LOC_Os07g13140OsAffx.1455.1.S1_at11/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13140OsAffx.4851.1.S1_x_at1/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13160Os.31647.1.S1_at11/117+7540188..7541183expressed protein
LOC_Os07g13160OsAffx.30595.1.S1_at1/117+7540188..7541183expressed protein
LOC_Os07g13170Os.27471.1.S1_at11/117+7543851..7548218indeterminate spikelet 1, putative, expressed
LOC_Os07g13180OsAffx.5309.1.S1_at5/117+7548795..7551618hypothetical protein
LOC_Os07g13190Os.31497.2.S1_x_at1/117+7562697..7566028retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31647.1.S1_at--899--1652Chr07:20534726..20534750 (25 bp)
AGCGCCACTGGGATGACCTCCGATC
LOC_Os07g34290
Os.31647.1.S1_at--182--7972Chr07:20534786..20534810 (25 bp)
GGATCTACAGCTGCATGTGTTCATC
LOC_Os07g34290
Os.31647.1.S1_at--1159--1592Chr07:20534794..20534814 (21 bp)
AGCTGCATGTGTTCATCGTCGGCTG
LOC_Os07g34290
Os.31647.1.S1_at--265--913Chr10:15164392..15164416 (25 bp)
AGGCGTCGATGCCTCGTTCATCTTC
NONE
Os.31647.1.S1_at--150--6552Chr07:20534942..20534966 (25 bp)
GATTAAACAGTCGACGCCCGCTATT
LOC_Os07g34290
Os.31647.1.S1_at--429--193Chr10:15164469..15164493 (25 bp)
ATTTCCGTTTTTTCTATCTAGACAT
NONE
Os.31647.1.S1_at--500--10033Chr10:15164487..15164510 (24 bp)
TAGACATCATCGAGAGCAACCCATG
NONE
Os.31647.1.S1_at--958--4313Chr10:15164512..15164531 (20 bp)
CCATGTTTATTTCCTCACCCCGTGT
NONE
Os.31647.1.S1_at--967--9671Chr07:7540276..7540300 (25 bp)
TCACCCCGTGTCCATGTTCTTCTTT
LOC_Os07g13160
Os.31647.1.S1_at--1106--10353Chr10:15164556..15164580 (25 bp)
TTTTTTCCCACCGTGTGTATAAGTG
NONE
Os.31647.1.S1_at--221--10172Chr07:20535074..20535098 (25 bp)
TATCAAGATCATCACTACATGCACG
LOC_Os07g34290
Target Sequence 
AGCGCCACTGGGATGACCTCCGATCCGTTGGTGNAGGCTGCANACAAGATGANGGCGCTTGGATCTACAGCTGCATGTGT
TCATCGTCGGCTGTCGAGCTCCAGCCAGGCCTCTTCCTGTCAGTGCTGCCTNGACGCTCTGTGTGGTGGGGGTTTTTCTC
NGAGGCGTCGATGCCTCGTTCATCTTCACCGGCGGAAGGAGCAGAAAGGAGGACGACGATTAAACAGTCGACGCCCGCTA
TTTCCGTTTTTTCTATCTAGACATCATCGAGAGCAACCCATGTTTATTTCCTCACCCCGTGTCCATGTTCTTCTTTTTNT
TNTTCTTTTTTTCCCACCGTGTGTATAAGTGTATCAAGATCATCACTACATGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis