Browse Element(s) Details


Os.317.1.S1_at

Description gb:AB033537.1
DB_XREF= gi:11094193
GEN=OsRPT6
TID=Os.317.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.317 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPT6 mRNA for 26S proteasome regulatory particle triple-A ATPase subunit6, complete cds.
PROD=26S proteasome regulatory particle triple-AATPase subunit6
FL= gb:AB033537.1 gb:AK102286.1 gb:AK106217.1 gb:AB052887.1 gb:AK061762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1105011/1126S protease regulatory subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11030Os.9470.1.S1_at10/112+5907033..5909620plastid ribosomal protein L19 precursor, putative, expressed
LOC_Os02g11040Os.12988.1.S1_at10/112+5912613..5914192expressed protein
LOC_Os02g11050Os.317.1.S1_at11/112+5918931..592365426S protease regulatory subunit 8, putative, expressed
LOC_Os02g11060Os.54034.1.S1_at11/112+5924727..5930096Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os02g11070Os.11952.1.S1_at11/112+5930197..5933077Fatty acid elongase, putative, expressed
LOC_Os02g11080OsAffx.11984.1.S1_at10/112+5935644..5936940hypothetical protein
LOC_Os02g11090OsAffx.3761.1.S1_x_at1/112+5943967..5946323hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.317.1.S1_at--762--291Chr02:5920356..5920380 (25 bp)
ATAGACATCTTGGATCAGGCCCTTC
LOC_Os02g11050
Os.317.1.S1_at--210--891Chr02:5920329..5920353 (25 bp)
AGGCCTGGTCGCATAGACAGGAAAA
LOC_Os02g11050
Os.317.1.S1_at--405--3171Chr02:5920306..5920330 (25 bp)
AATTGAATTTCCTAATCCTAATGAG
LOC_Os02g11050
Os.317.1.S1_at--306--9771Chr02:5920201..5920312 (25 bp)
TAATGAGGATTCACGCTTTGATATC
LOC_Os02g11050
Os.317.1.S1_at--774--4831Chr02:5919394..5919413 (20 bp)
GCTCAAGGCGGTCTGCACAGAAGCT
LOC_Os02g11050
Os.317.1.S1_at--488--5411Chr02:5919375..5919399 (25 bp)
GAAGCTGGAATGTTTGCTCTTCGTG
LOC_Os02g11050
Os.317.1.S1_at--430--7711Chr02:5919344..5919368 (25 bp)
GGGTGCATGTAACACAAGAGGACTT
LOC_Os02g11050
Os.317.1.S1_at--990--2711Chr02:5919206..5919230 (25 bp)
AAGCAGCGGAAGCATGTAACTGCAT
LOC_Os02g11050
Os.317.1.S1_at--627--9811Chr02:5919190..5919214 (25 bp)
TAACTGCATGTTGTGGACTTCTTCC
LOC_Os02g11050
Os.317.1.S1_at--569--8131Chr02:5919176..5919200 (25 bp)
GGACTTCTTCCATGTGCTTTAGAAT
LOC_Os02g11050
Os.317.1.S1_at--492--251Chr02:5919153..5919177 (25 bp)
ATATGTTGTTCCATGGTTAACTTTC
LOC_Os02g11050
Target Sequence 
ATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATTC
ACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGTATTGATCTGAAAAAGATCGCTGAAAAGA
TGAATGGGGCTTCAGGAGCCGAGCTCAAGGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
GTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAGACACGGAAAAGAACATGTCCCTACGGAAGCT
CTGGAAGTGAAGCTCACGTCTTAATAGCCTAAGCTTTCACTGCATCNGCGTGAAGCAGCGGAAGCATGTAACTGCATGTT
GTGGACTTCTTCCATGTGCTTTAGAATATGTTGTTCCATGGTTAACTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis