Browse Element(s) Details


Os.31723.1.S1_at

Description gb:AK106856.1
DB_XREF= gi:32992065
TID=Os.31723.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0078O01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B09, full insert sequence.
FL= gb:AK106856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3560411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31723.1.S1_at--903--8611Chr10:18716181..18716205 (25 bp)
TGGTGAGAGGCGACGCGACCACAAC
LOC_Os10g35604
Os.31723.1.S1_at--729--5851Chr10:18716268..18716292 (25 bp)
GACCAACCGGACGATGTGATGCACT
LOC_Os10g35604
Os.31723.1.S1_at--635--571Chr10:18716306..18716330 (25 bp)
ATCCATCGCAAAGTCCTCGAGTCGT
LOC_Os10g35604
Os.31723.1.S1_at--138--2331Chr10:18716315..18716339 (25 bp)
AAAGTCCTCGAGTCGTGGCTTCGCG
LOC_Os10g35604
Os.31723.1.S1_at--111--7531Chr10:18716465..18716489 (25 bp)
GTGGAGCGTTATACATTGCCTTAGT
LOC_Os10g35604
Os.31723.1.S1_at--347--7071Chr10:18716539..18716563 (25 bp)
GTAAGGCTCAGAACCCAGATCATCT
LOC_Os10g35604
Os.31723.1.S1_at--90--1672Chr10:18716564..18716588 (25 bp)
AGCCCACCACCTTGTAAAGATAGCC
LOC_Os10g35604
Os.31723.1.S1_at--513--11Chr10:18716583..18716607 (25 bp)
ATAGCCGAAAAACCCATGGACATTT
LOC_Os10g35604
Os.31723.1.S1_at--814--8131Chr10:18716600..18716624 (25 bp)
GGACATTTCTCATACATTGCCTTAG
LOC_Os10g35604
Os.31723.1.S1_at--202--3571Chr10:18716610..18716634 (25 bp)
CATACATTGCCTTAGTGGCTCTAAA
LOC_Os10g35604
Os.31723.1.S1_at--221--10451Chr10:18716621..18716645 (25 bp)
TTAGTGGCTCTAAAGTCGGGTGACT
LOC_Os10g35604
Target Sequence 
TGGTGAGAGGCGACGCGACCACAACGGCGGCAATGAGCGGCGACAACGACCACGACGAGATGGGGACTTAGGGTAGGTGC
ATGGGGGGACCAACCGGACGATGTGATGCACTGGGCTCCGGGCTCATCCATCGCAAAGTCCTCGAGTCGTGGCTTCGCGG
CTCCCGATCCTAGGCCGGCGCTTCAACCGTTCCCTCTGCAAGAACCGCTCCGGCCTACGGAACCACGAGCTCGACTGCCA
GCTCAGCTTGGCTCCGACGTGAAGCCGTGAGACCACAGGGCAGAGTGGAGCGTTATACATTGCCTTAGTAAAAAACTCGA
ATATTAGGGAAGGGCCTAATATCAAATAATTAGAAGGAGTAAGGCTCAGAACCCAGATCATCTAGCCCACCACCTTGTAA
AGATAGCCGAAAAACCCATGGACATTTCTCATACATTGCCTTAGTGGCTCTAAAGTCGGGTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis