Browse Element(s) Details


Os.31879.1.S1_at

Description gb:AK106587.1
DB_XREF= gi:32991796
TID=Os.31879.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 10,OSJNBa0006L06.20 (OJ1138_B05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-F01, full insert sequence.
FL= gb:AK106587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g441309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44070NANA3+24722025..24733234transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44100OsAffx.13338.1.S1_at9/113+24734710..24737183phosphonate metabolism protein, putative
LOC_Os03g44110OsAffx.25532.1.S1_at11/113+24738157..24740896phosphonate metabolism protein, putative
LOC_Os03g44130OsAffx.617.1.A1_at11/113+24746867..24748716expressed protein
LOC_Os03g44130OsAffx.617.1.A1_x_at11/113+24746867..24748716expressed protein
LOC_Os03g44130Os.31879.1.S1_at9/113+24746867..24748716expressed protein
LOC_Os03g44140OsAffx.25531.1.S1_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.1.S1_x_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.2.S1_x_at1/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31879.1.S1_at--845--5035Chr07:872582..872606 (25 bp)
GCAGCATTAGAGTGAGTACTTTTGT
NONE
Os.31879.1.S1_at--573--3575Chr07:872611..872635 (25 bp)
CATATGGCATGCAAGTAGTAGGATA
NONE
Os.31879.1.S1_at--376--6935Chr07:872628..872652 (25 bp)
GTAGGATAGTACTTTTGTGAAATAG
NONE
Os.31879.1.S1_at--835--6235Chr07:872652..872676 (25 bp)
GATGGCATGCAAATAGAAGGATAGT
NONE
Os.31879.1.S1_at--713--5295Chr07:872667..872691 (25 bp)
GAAGGATAGTACTTTTGTGAAACAA
NONE
Os.31879.1.S1_at--746--7695Chr07:872695..872719 (25 bp)
GGGTACTTTTGTGAAGCAGATAGTA
NONE
Os.31879.1.S1_at--369--10095Chr07:872721..872745 (25 bp)
TAGGATATACTTTTGCTTAGAGGGA
NONE
Os.31879.1.S1_at--279--2055Chr07:872729..872753 (25 bp)
ACTTTTGCTTAGAGGGAGTGCATGC
NONE
Os.31879.1.S1_at--701--8035Chr07:872743..872767 (25 bp)
GGAGTGCATGCAAGTAGTTACTTCA
NONE
Os.31879.1.S1_at--1092--5695Chr07:872799..872823 (25 bp)
GACTAGTAATTGACCTTGAATGCCA
NONE
Os.31879.1.S1_at--939--5835Chr07:872810..872834 (25 bp)
GACCTTGAATGCCATGGTGGTCAAA
NONE
Target Sequence 
GCAGCATTAGAGTGAGTACTTTTGTGAAACATATGGCATGCAAGTAGTAGGATAGTACTTTTGTGAAATAGATGGCATGC
AAATAGAAGGATAGTACTTTTGTGAAACAAAGGGGTACTTTTGTGAAGCAGATAGTAGTAGGATATACTTTTGCTTAGAG
GGAGTGCATGCAAGTAGTTACTTCATTAAGTAGAATGTGACAAACTTGGAGTACAAGACTAGTAATTGACCTTGAATGCC
ATGGTGGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis