Browse Element(s) Details


Os.18830.1.S2_at

Description gb:AK099445.1
DB_XREF= gi:32984654
TID=Os.18830.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021G10, full insert sequence.
FL= gb:AK099445.1 gb:AK108010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4415011/11ornithine aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44110OsAffx.25532.1.S1_at11/113+24738157..24740896phosphonate metabolism protein, putative
LOC_Os03g44130OsAffx.617.1.A1_at11/113+24746867..24748716expressed protein
LOC_Os03g44130OsAffx.617.1.A1_x_at11/113+24746867..24748716expressed protein
LOC_Os03g44130Os.31879.1.S1_at9/113+24746867..24748716expressed protein
LOC_Os03g44140OsAffx.25531.1.S1_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.1.S1_x_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.2.S1_x_at1/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18830.1.S2_at--1125--7071Chr03:24764657..24765071 (25 bp)
GTCAATCAGTCCTGAGGAGCTTGCA
LOC_Os03g44150
Os.18830.1.S2_at--389--3631Chr03:24764638..24764662 (25 bp)
CTTGCAGAAGCATCGAAGGCGTTCA
LOC_Os03g44150
Os.18830.1.S2_at--338--2951Chr03:24764623..24764647 (25 bp)
AAGGCGTTCAGCGATGTGCTTGAGC
LOC_Os03g44150
Os.18830.1.S2_at--1103--771Chr03:24764610..24764634 (25 bp)
ATGTGCTTGAGCATGACCTGCCACA
LOC_Os03g44150
Os.18830.1.S2_at--629--2231Chr03:24764543..24764567 (25 bp)
ACAATCCTGTGACAGATGCGGCAGA
LOC_Os03g44150
Os.18830.1.S2_at--220--6291Chr03:24764489..24764512 (24 bp)
GATGAAACGTTTCCAGAGGCACCCG
LOC_Os03g44150
Os.18830.1.S2_at--1107--2251Chr03:24764451..24764475 (25 bp)
AAATAGCAGAACACACCTCGCGAAT
LOC_Os03g44150
Os.18830.1.S2_at--517--231Chr03:24764398..24764422 (25 bp)
ATATATACACCTCCTTGTTGCGATG
LOC_Os03g44150
Os.18830.1.S2_at--74--9251Chr03:24764387..24764411 (25 bp)
TCCTTGTTGCGATGTCTGGGACATA
LOC_Os03g44150
Os.18830.1.S2_at--792--271Chr03:24764365..24764389 (25 bp)
ATATGGTCCAGGGATTTGTCGCCTA
LOC_Os03g44150
Os.18830.1.S2_at--1070--6511Chr03:24764353..24764377 (25 bp)
GATTTGTCGCCTAATCGAGCTGGTT
LOC_Os03g44150
Target Sequence 
GTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACANGCTGCAN
GAANCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGA
TNNNNNNNNNNNNNNNNATAGACGAGACGATGAAACGTTTCCAGAGGCACCCGTTTCGCCCAAATAAAATAGCAGAACAC
ACCTCGCGAATTCATNGCTCATTGTAGTAGTAGAGTAGNATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTC
CAGGGATTTGTCGCCTAATCGAGCTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18830.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis