Browse Element(s) Details


Os.17074.1.S1_at

Description gb:AK099664.1
DB_XREF= gi:32984873
TID=Os.17074.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066P07, full insert sequence.
FL= gb:AK066359.1 gb:AK099664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4420011/11Beclin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein
LOC_Os03g44230Os.3739.1.S1_at11/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44230Os.38785.1.A1_at1/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44240OsAffx.10048.1.S1_x_at1/113+24812621..24816981retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g44250OsAffx.25534.1.S1_at11/113+24819699..24820547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17074.1.S1_at--192--8231Chr03:24794936..24794960 (25 bp)
GGCAATACAAGTTTTGCCCCACCCT
LOC_Os03g44200
Os.17074.1.S1_at--393--1811Chr03:24794956..24794980 (25 bp)
ACCCTCTGGATCTTTACACGTAGCA
LOC_Os03g44200
Os.17074.1.S1_at--691--3331Chr03:24794972..24794996 (25 bp)
CACGTAGCACAGTCTTCCAAGGGAT
LOC_Os03g44200
Os.17074.1.S1_at--925--3331Chr03:24795002..24795026 (25 bp)
CACTGGCTTGTGATGCTGATTATAA
LOC_Os03g44200
Os.17074.1.S1_at--769--3291Chr03:24795038..24795062 (25 bp)
CAAATGGCATTGACTAGGCTCGTTT
LOC_Os03g44200
Os.17074.1.S1_at--109--5691Chr03:24795049..24795073 (25 bp)
GACTAGGCTCGTTTGTAATTTACAG
LOC_Os03g44200
Os.17074.1.S1_at--652--3431Chr03:24795306..24795330 (25 bp)
CAGATGATGGTGCAACTCAGCTTAT
LOC_Os03g44200
Os.17074.1.S1_at--620--5151Chr03:24795317..24795341 (25 bp)
GCAACTCAGCTTATAGTCGGCTTGA
LOC_Os03g44200
Os.17074.1.S1_at--469--7191Chr03:24795332..24795356 (25 bp)
GTCGGCTTGATCATTATTCATGTAA
LOC_Os03g44200
Os.17074.1.S1_at--980--3131Chr03:24795355..24795379 (25 bp)
AATTATTTAGCCATGTGTGACAGAA
LOC_Os03g44200
Os.17074.1.S1_at--141--9952Chr11:5098593..5098613 (21 bp)
TACGAGATCCTAGAGCAATTCATGC
NONE
Target Sequence 
GGCAATACAAGTTTTGCCCCACCCTCTGGATCTTTACACGTAGCACAGTCTTCCAAGGGATGAAGTCACTGGCTTGTGAT
GCTGATTATAAGCGCATATTGGCAAATGGCATTGACTAGGCTCGTTTGTAATTTACAGTAGTACATACAGCTAGTTTTTT
TTTTNNCCTTTTGGCCGCCTTCNAGTTGTACTTCCTCCGTTTCACAATGTAAGTCATCATAGCATTTCCCATATTTATAA
TGATGTTAATGAATCTATATAGATATATATGTCTAGATTTATTAACGTCAATATGAATATAGGAAATGCTAGAATGACTT
ACATTGTGAAACGGGGGGAGTATATATGGTTGAAATCTGCACAGGANAAATTGCAGATGATGGTGCAACTCAGCTTATAG
TCGGCTTGATCATTATTCATGTAATTATTTAGCCATGTGTGACAGAAAATGCGAGTGATACGAGATCCTAGAGCAATTCA
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis