Browse Element(s) Details


Os.3739.1.S1_at

Description gb:AB022783.1
DB_XREF= gi:7415520
GEN=OsproT
TID=Os.3739.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.3739 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for amino acid permease, complete cds.
PROD=amino acid permease
FL= gb:AB022783.1 gb:AK067118.1 gb:AK062005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4423011/11proline transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein
LOC_Os03g44230Os.3739.1.S1_at11/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44230Os.38785.1.A1_at1/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44240OsAffx.10048.1.S1_x_at1/113+24812621..24816981retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g44250OsAffx.25534.1.S1_at11/113+24819699..24820547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3739.1.S1_at--989--1311Chr03:24804929..24804953 (25 bp)
AGAGGAGGCTACCTGACCGTCAACA
LOC_Os03g44230
Os.3739.1.S1_at--487--5691Chr03:24804872..24804896 (25 bp)
GACTTCATGAGCCTGACGGGTGCAC
LOC_Os03g44230
Os.3739.1.S1_at--838--3071Chr03:24804815..24804839 (25 bp)
AATCACATGTACCTCACGGTGAAGC
LOC_Os03g44230
Os.3739.1.S1_at--380--5591Chr03:24804768..24804792 (25 bp)
GAAATGCTGGCACTGGCTGAACGTT
LOC_Os03g44230
Os.3739.1.S1_at--566--8311Chr03:24804697..24804721 (25 bp)
GGCTAATCACGGTCGACTACAGTAC
LOC_Os03g44230
Os.3739.1.S1_at--779--2311Chr03:24804641..24804665 (25 bp)
AAAGTGCAAGCATGCAGCCCTGGAT
LOC_Os03g44230
Os.3739.1.S1_at--146--6451Chr03:24804619..24804643 (25 bp)
GATCAGCTGTAAATTCGTCCTCTTC
LOC_Os03g44230
Os.3739.1.S1_at--656--9151Chr03:24804481..24804505 (25 bp)
TGCCTCAAAACGTACCGCTATGGTT
LOC_Os03g44230
Os.3739.1.S1_at--224--9971Chr03:24804469..24804493 (25 bp)
TACCGCTATGGTTCACTTTTTAAGA
LOC_Os03g44230
Os.3739.1.S1_at--477--9791Chr03:24804449..24804473 (25 bp)
TAAGAACTGTACTGCTACCTCTGTT
LOC_Os03g44230
Os.3739.1.S1_at--749--4851Chr03:24804436..24804460 (25 bp)
GCTACCTCTGTTTGCGGAGATTTTT
LOC_Os03g44230
Target Sequence 
AGAGGAGGCTACCTGACCGTCAACACCTTGGTGGCCGCGATGCTCCCCTTCCTTGGCGACTTCATGAGCCTGACGGGTGC
ACTCAGCACCTTTCCCCTGACATTCGTTCTTGCAAATCACATGTACCTCACGGTGAAGCAGAACAAGATGTCCATCTTCA
GGAAATGCTGGCACTGGCTGAACGTTGTTGGCTTCAGCTGCTTGTCCGTCGCAGCTGCGGTTGCTGCGGTGAGGCTAATC
ACGGTCGACTACAGTACATACCATTTGTTTGCTGATATGTGAGGCTGGAAAGTGCAAGCATGCAGCCCTGGATCAGCTGT
AAATTCGTCCTCTTCTTTTTTATTTTTTTGGTTAGGGGATGCATGTAGGTCGATAGAATGATGGAGATTGCAATAAATAA
TTTGGCTAAAATGTTGTCCAGATTTGGTTGTTTGAGGTGCAAGATGTTTGCCTCAAAACGTACCGCTATGGTTCACTTTT
TAAGAACTGTACTGCTACCTCTGTTTGCGGAGATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis