Browse Element(s) Details


OsAffx.25534.1.S1_at

Description tigr:9631.m04271
TID=OsAffx.25534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4425011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein
LOC_Os03g44230Os.3739.1.S1_at11/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44230Os.38785.1.A1_at1/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44240OsAffx.10048.1.S1_x_at1/113+24812621..24816981retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g44250OsAffx.25534.1.S1_at11/113+24819699..24820547hypothetical protein
LOC_Os03g44260NANA3+24836785..24837042hypothetical protein
LOC_Os03g44270NANA3+24837993..24840883retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g44280OsAffx.19542.3.S1_x_at8/113+24841292..24843846retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25534.1.S1_at--1011--7751Chr03:24820229..24820253 (25 bp)
GGTGATGATCAGCTCCCCGCAGAAG
LOC_Os03g44250
OsAffx.25534.1.S1_at--194--4491Chr03:24820203..24820227 (25 bp)
GCCGGTGGCCGTACGAAACGACGAT
LOC_Os03g44250
OsAffx.25534.1.S1_at--503--5771Chr03:24820184..24820208 (25 bp)
GACGATGAGATCAACGAGCCGCCGT
LOC_Os03g44250
OsAffx.25534.1.S1_at--396--5771Chr03:24820094..24820118 (25 bp)
GACGATGTCGCAACCGAGGGTGAAC
LOC_Os03g44250
OsAffx.25534.1.S1_at--403--2571Chr03:24820072..24820096 (25 bp)
AACGGCCAGATCAGCAACCACAAGA
LOC_Os03g44250
OsAffx.25534.1.S1_at--182--5491Chr03:24820031..24820055 (25 bp)
GAAACCCACGGAGAGGCTGTCAAAG
LOC_Os03g44250
OsAffx.25534.1.S1_at--294--5171Chr03:24819983..24820007 (25 bp)
GCAAGCGACAAAACCACGACGACGA
LOC_Os03g44250
OsAffx.25534.1.S1_at--237--9411Chr03:24819944..24819968 (25 bp)
TCGTCATCGTCAGAGGAGCTTGCGA
LOC_Os03g44250
OsAffx.25534.1.S1_at--891--971Chr03:24819931..24819955 (25 bp)
AGGAGCTTGCGATTGTCACCTCCAA
LOC_Os03g44250
OsAffx.25534.1.S1_at--806--8931Chr03:24819879..24819903 (25 bp)
TGACTCTGCGTCGTTTGGCGAGGAA
LOC_Os03g44250
OsAffx.25534.1.S1_at--975--9671Chr03:24819730..24819754 (25 bp)
TCACCCGGTTCAACCGAGAGATGAG
LOC_Os03g44250
Target Sequence 
GGTGATGATCAGCTCCCCGCAGAAGCGCCGGTGGCCGTACGAAACGACGATGAGATCAACGAGCCGCCGTCGGCGCCGGC
GGTGACATCGTCGGCGACGCCGTCCTCCGACAACCCGCCGGCGTTCATCGCCTCCGACGATGTCGCAACCGAGGGTGAAC
GGCCAGATCAGCAACCACAAGAAGCAGCAACCGACGGCGAAACCCACGGAGAGGCTGTCAAAGGAGACGACGACGAAGAC
GAAACAGCAAGCGACAAAACCACGACGACGAACAAGAGCCTCCCCTCGTCATCGTCAGAGGAGCTTGCGATTGTCACCTC
CAACAACGACGACGATTACGACGACGGCGGTGACTCTGCGTCGTTTGGCGAGGAAGACGAAGGGAAAGTAGTGCCGTGGG
GCATGCCGGCGCCGGCGACGACGACAGGCGGCGGCGGCGGCGGCAAGCAGTACTGGCAGCTGAGCGACGAGGAGCTGAAC
AGGAAGGTGGAGGAGTTCATCACCCGGTTCAACCGAGAGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis