Browse Element(s) Details


OsAffx.25533.1.S1_at

Description tigr:9631.m04268
TID=OsAffx.25533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g442209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein
LOC_Os03g44230Os.3739.1.S1_at11/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44230Os.38785.1.A1_at1/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44240OsAffx.10048.1.S1_x_at1/113+24812621..24816981retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g44250OsAffx.25534.1.S1_at11/113+24819699..24820547hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25533.1.S1_at--688--3811Chr03:24802215..24802238 (24 bp)
CTCCTTCTGGTCCTCGTTGTGGTGA
LOC_Os03g44220
OsAffx.25533.1.S1_at--62--8611NONE
TGGTCCTCGTTGTGGTGATCTCATT
NONE
OsAffx.25533.1.S1_at--434--3791NONE
CTCGTTGTGGTGATCTCATTCGTTG
NONE
OsAffx.25533.1.S1_at--491--7491Chr03:24800783..24800802 (20 bp)
GTGGTGATCTCATTCGTTGGTAGAA
LOC_Os03g44220
OsAffx.25533.1.S1_at--1063--6371Chr03:24800778..24800802 (25 bp)
GATCTCATTCGTTGGTAGAAGGGAA
LOC_Os03g44220
OsAffx.25533.1.S1_at--1041--5311Chr03:24800761..24800785 (25 bp)
GAAGGGAAGAGGGTTCTCCACCATA
LOC_Os03g44220
OsAffx.25533.1.S1_at--701--7591Chr03:24800758..24800782 (25 bp)
GGGAAGAGGGTTCTCCACCATACAT
LOC_Os03g44220
OsAffx.25533.1.S1_at--487--3371Chr03:24800743..24800767 (25 bp)
CACCATACATGGAGAACATCAACAA
LOC_Os03g44220
OsAffx.25533.1.S1_at--312--4671Chr03:24800707..24800731 (25 bp)
GCGTGGATCCTAAGATTCTGGTGGA
LOC_Os03g44220
OsAffx.25533.1.S1_at--1094--7831Chr03:24800592..24800616 (25 bp)
GGTTTGGAGCATTCGTTTAGGTGCA
LOC_Os03g44220
OsAffx.25533.1.S1_at--555--10851Chr03:24800589..24800613 (25 bp)
TTGGAGCATTCGTTTAGGTGCATGC
LOC_Os03g44220
Target Sequence 
CTCCTTCTGGTCCTCGTTGTGGTGATCTCATTCGTTGGTAGAAGGGAAGAGGGTTCTCCACCATACATGGAGAACATCAA
CAATGGCAACAGGGGCGTGGATCCTAAGATTCTGGTGGAGAGGTGGGGAGATGCGGCGTGGGCAAGGGAAGGGGAACCAG
GAAGGAGGGATCGATGTGGGGTGCGGAAAGGGGGAAGGGTAAGGGAGAGGGTTTGGAGCATTCGTTTAGGTGCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis