Browse Element(s) Details


Os.31893.1.S1_at

Description gb:AK106554.1
DB_XREF= gi:32991763
TID=Os.31893.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MtN21 (P0487H02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G11, full insert sequence.
FL= gb:AK106554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1929011/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19260Os.2081.1.S1_at11/111+10888588..10890585ATPase, AAA family protein, expressed
LOC_Os01g19270OsAffx.11108.1.S1_at11/111+10892380..10894223hypothetical protein
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31893.1.S1_at--427--531Chr01:10910832..10910856 (25 bp)
ATCGCGTTCGCGCTCATGTCGTGGT
LOC_Os01g19290
Os.31893.1.S1_at--634--5351Chr01:10910948..10910972 (25 bp)
GAAGATACACGTCGGCAGCGCGATC
LOC_Os01g19290
Os.31893.1.S1_at--832--2451Chr01:10911141..10911165 (25 bp)
AACAAGCACGAGACGACCCGGAACG
LOC_Os01g19290
Os.31893.1.S1_at--116--1811Chr01:10911156..10911180 (25 bp)
ACCCGGAACGGCTGCAGCAACTGAA
LOC_Os01g19290
Os.31893.1.S1_at--863--5151Chr01:10911172..10911196 (25 bp)
GCAACTGAAGCTGATGGCGCACCGG
LOC_Os01g19290
Os.31893.1.S1_at--461--6451Chr01:10911212..10911236 (25 bp)
GATCACCTGATTATATATGCGCTAG
LOC_Os01g19290
Os.31893.1.S1_at--1099--10131Chr01:10911227..10911251 (25 bp)
TATGCGCTAGCTGCACATTTCACAG
LOC_Os01g19290
Os.31893.1.S1_at--466--3311Chr01:10911247..10911271 (25 bp)
CACAGGCTGTTGCATGTGTGACAAC
LOC_Os01g19290
Os.31893.1.S1_at--737--8671Chr01:10911261..10911285 (25 bp)
TGTGTGACAACTACATCTTGCTGGG
LOC_Os01g19290
Os.31893.1.S1_at--748--7471Chr01:10911356..10911380 (25 bp)
GTGTGTGAGACTGTACCTGTGCCTT
LOC_Os01g19290
Os.31893.1.S1_at--400--4271Chr01:10911371..10911395 (25 bp)
CCTGTGCCTTGGTTCTTGACATTAA
LOC_Os01g19290
Target Sequence 
ATCGCGTTCGCGCTCATGTCGTGGTGCATCCAGGTGCGCGGCCCGCTGTTCGTGTCCATGTTCAGCCCGCTGATGCTGGT
GGTCGTGGCCATTGTCGNCTGGGCGATCCTCGACGAGAAGATACACGTCGGCAGCGCGATCGGGTCCGTGCTGATCGTCG
CCGGGCTGTACATGGTGCTGTGGGGGAAGGCGAGGGAGATGGGCTCGCCATCGGACCTCGACGGCGGCGGCGGCGGCGGC
GGCGTGGTGGAGCTGAACGGCAAGGGCGCCGACGCCGCGACGACCTTGCCGGTGTTCTGCACCACCACCAACAAGCACGA
GACGACCCGGAACGGCTGCAGCAACTGAAGCTGATGGCGCACCGGGGCATATGGATGGCNGATCACCTGATTATATATGC
GCTAGCTGCACATTTCACAGGCTGTTGCATGTGTGACAACTACATCTTGCTGGGGATATCAATTGGTGCGGTAGTATATA
GATGTGGGAGTTTGCTAGTAGTAGCTAGGTAAAAGTTGGGGGAGGTGTGTGAGACTGTACCTGTGCCTTGGTTCTTGACA
TTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis