Browse Element(s) Details


OsAffx.11108.1.S1_at

Description tigr:9629.m01880
TID=OsAffx.11108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1927011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19220Os.2075.1.S1_at11/111+10868248..10871040Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os01g19230NANA1+10872519..10873122hypothetical protein
LOC_Os01g19240OsAffx.23303.1.S1_at11/111+10874413..10878471Integral membrane protein DUF6 containing protein
LOC_Os01g19250NANA1+10882669..10882983hypothetical protein
LOC_Os01g19260Os.2081.1.S1_at11/111+10888588..10890585ATPase, AAA family protein, expressed
LOC_Os01g19270OsAffx.11108.1.S1_at11/111+10892380..10894223hypothetical protein
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11108.1.S1_at--841--10491Chr01:10892413..10892437 (25 bp)
TTAATCACTCATAAGGCATCTAGGA
LOC_Os01g19270
OsAffx.11108.1.S1_at--1078--8271Chr01:10892427..10892451 (25 bp)
GGCATCTAGGAGGATGACATCCCGC
LOC_Os01g19270
OsAffx.11108.1.S1_at--972--8011Chr01:10892435..10892459 (25 bp)
GGAGGATGACATCCCGCTCGACATT
LOC_Os01g19270
OsAffx.11108.1.S1_at--1140--4191Chr01:10892447..10892471 (25 bp)
CCCGCTCGACATTCTTATTGGATGA
LOC_Os01g19270
OsAffx.11108.1.S1_at--532--8551Chr01:10892502..10892526 (25 bp)
TGGAGAGCCATCTTCAGGGAGACCG
LOC_Os01g19270
OsAffx.11108.1.S1_at--854--431Chr01:10892511..10892535 (25 bp)
ATCTTCAGGGAGACCGCACCATCAA
LOC_Os01g19270
OsAffx.11108.1.S1_at--196--3471Chr01:10892530..10892554 (25 bp)
CATCAAGCGGCCGTCGAACCAGTGG
LOC_Os01g19270
OsAffx.11108.1.S1_at--478--3991Chr01:10892541..10892565 (25 bp)
CGTCGAACCAGTGGCGCACGAACGG
LOC_Os01g19270
OsAffx.11108.1.S1_at--851--2211Chr01:10893919..10893943 (25 bp)
ACAAGCTCGCCTACAGCGTGGCGAG
LOC_Os01g19270
OsAffx.11108.1.S1_at--766--1551Chr01:10894102..10894126 (25 bp)
AGCTTGCCGGATCCGTGGCGAGCTT
LOC_Os01g19270
OsAffx.11108.1.S1_at--162--2211Chr01:10894164..10894188 (25 bp)
ACAACGCGGTGGCTGTCCCTCGACG
LOC_Os01g19270
Target Sequence 
TTAATCACTCATAAGGCATCTAGGAGGATGACATCCCGCTCGACATTCTTATTGGATGAAGTGGACTACGAAGGGCGCAG
TGGGTGCGGTGGAGAGCCATCTTCAGGGAGACCGCACCATCAAGCGGCCGTCGAACCAGTGGCGCACGAACGGCGGGGAG
TAGCGGTGGCGGCAGCGGCGGATCTGGCGGCGGCGGGGAGCAGCGGTGAGGGCGGATGGCTCGACGCCGCCGTCCTCCTC
CCCTACAACGGCGCGGACGATCTCGCCGACGGCGTGGCGAGCTTGGCGGCGGACAAGCTCGCCTACAGCGTGGCGAGCTT
GGCAGCGGCGGGCTCGCCGGATCCGGACGTGGACTCGCCGGATCTGGCGGCGGCGGGGAGCAGCGGTGAGGGCGGATGGC
TCGATGTCGCCGTCCTCCTCCCCCACGACGGCGCGGACGATCTCGCCGACGGCGTGGCGAGCTTGGCAGCGGACGAGCTT
GCCGGATCCGTGGCGAGCTTGGCGGCGGCGGGCTCGCCGGATCGGGCGGTGGCGGCCACAACGCGGTGGCTGTCCCTCGA
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis