Browse Element(s) Details


OsAffx.23303.1.S1_at

Description tigr:9629.m01877
TID=OsAffx.23303.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1924011/11Integral membrane protein DUF6 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19190NANA1+10850579..10856203retrotransposon protein, putative, unclassified
LOC_Os01g19200Os.28943.1.S1_x_at4/111+10856826..10860099retrotransposon protein, putative, unclassified
LOC_Os01g19210OsAffx.13631.4.S1_s_at11/111+10861038..10864112retrotransposon protein, putative, unclassified
LOC_Os01g19210Os.47130.4.A1_x_at1/111+10861038..10864112retrotransposon protein, putative, unclassified
LOC_Os01g19220Os.2075.1.S1_at11/111+10868248..10871040Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os01g19230NANA1+10872519..10873122hypothetical protein
LOC_Os01g19240OsAffx.23303.1.S1_at11/111+10874413..10878471Integral membrane protein DUF6 containing protein
LOC_Os01g19250NANA1+10882669..10882983hypothetical protein
LOC_Os01g19260Os.2081.1.S1_at11/111+10888588..10890585ATPase, AAA family protein, expressed
LOC_Os01g19270OsAffx.11108.1.S1_at11/111+10892380..10894223hypothetical protein
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23303.1.S1_at--576--7111Chr01:10877609..10877633 (25 bp)
GTCATCGGCTCCAACGTCGCGTGGG
LOC_Os01g19240
OsAffx.23303.1.S1_at--688--4011Chr01:10877623..10877647 (25 bp)
CGTCGCGTGGGCCATCTGGTTCATC
LOC_Os01g19240
OsAffx.23303.1.S1_at--232--8711Chr01:10877732..10877756 (25 bp)
TGTCCAAGAGCTTCGCTTGCCCGTA
LOC_Os01g19240
OsAffx.23303.1.S1_at--856--8871Chr01:10877771..10877795 (25 bp)
TGATGGCGTTGATCGCCAGCGTGCA
LOC_Os01g19240
OsAffx.23303.1.S1_at--999--7631Chr01:10877840..10877864 (25 bp)
GGGAGCTCGGCCTTGACATCAGGCT
LOC_Os01g19240
OsAffx.23303.1.S1_at--396--1591Chr01:10877843..10877867 (25 bp)
AGCTCGGCCTTGACATCAGGCTCGT
LOC_Os01g19240
OsAffx.23303.1.S1_at--367--1651Chr01:10878026..10878050 (25 bp)
AGCGCGGGCCGGTGTTCGTGTCCAT
LOC_Os01g19240
OsAffx.23303.1.S1_at--995--4971Chr01:10878095..10878119 (25 bp)
GCATCCTCGGCGAGAAGATACACGT
LOC_Os01g19240
OsAffx.23303.1.S1_at--890--2151Chr01:10878114..10878276 (25 bp)
ACACGTCGGGAGTGTTATCGGCGCC
LOC_Os01g19240
OsAffx.23303.1.S1_at--596--491Chr01:10878268..10878292 (25 bp)
ATCGGCGCCGTGATCATTGTCGTGG
LOC_Os01g19240
OsAffx.23303.1.S1_at--14--7951Chr01:10878396..10878420 (25 bp)
GGACGACACGACAGGACGAGCCCCG
LOC_Os01g19240
Target Sequence 
GTCATCGGCTCCAACGTCGCGTGGGCCATCTGGTTCATCATCCAGAAGAATCTGTCCAAGAGCTTCGCTTGCCCGTACAC
GAGCACGGCGCTGATGGCGTTGATCGCCAGCGTGCAGTGCGCCGCCATCGCGGGGGCGGCGGAGCGGAGGTTCTCGGCGT
GGGAGCTCGGCCTTGACATCAGGCTCGTCGGCGCGCTCTACGCGGGGATCGTGGCGTCGGGGATGGTGTGCACGGTGATG
TCGTGGTGCATCCAGGAGCGCGGGCCGGTGTTCGTGTCCATGTTCAGCCCGCTGATGCTCATCGTCGTCGCCGTCGTCGG
CTGGGGCATCCTCGGCGAGAAGATACACGTCGGGAGTGTTATCGGCGCCGTGATCATTGTCGTGGGGCTGTACACCGTGC
TCTGGGGCAAGGGGAGGGACTTGGACGGCGCCGCCGTCGCCATTGCCAGCTTGCCCGGCGACGAGGAGATGAACGGCGTC
GTTGGCGCGGACGACACGACAGGACGAGCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis